Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1013g00004 ATGGACTGCAGACTTGAGTGCTCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCATATGAGGATCTCATACCATTCGGTTCATGAACCAATCTGTGGCATTTGCAGGAAACATTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAGTGCAGAGATATTTTTGCCTACAGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGAAGGATCCACCAAGAAAATTGCCAACTCTCTGGAATAAATGCTAGAATACTTGTTGGTCGCTTTTCAAACTTGGGTATTCGTGATAATTTGACTATTGGTGGGGGAGGAAGAGGACCACAAGTTGTTGCACTAGCTTGTAAAATGGTTGGTGGTGGCAGTGATGGTTCATTGGATCTCTGTGCAAGAGTCTGCATAATCGATGAGCACGAGAACATAATTTTCCACTCTTATGTGAAGCCATCAATTCCAATCACAAACTACAGGTATGAGTCTACAGGCATTAGACAAGAATACTTGAGGGATGCAATGCCAATGAAACAAGTTCAGAGGAAGATTCAGGACTTTCTTTGCAACGGAGAACCTATGTGGACAATTCGAGCAAGAGGCGGAAAAGCCAGGATTCTTGTGGGTCATGGTTTAGATCATGATCTAGAATGTTTACAAATAGAATATCGAGCAGAAAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACGAGCAAGCTGAGCAACTCACTCAAGTACTTAACACAAGCATATCTTGGGTATGACATTCAAACTGGGATACAGGATCCTTACGATGATTGTGTTGCAACAATGAGGCTCTACATGAGAATGAGATCCCAAGTACACAAAATAGAGGATTATCCATTGGCATCCGACGCTCAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTAGAAATCTCAAGGTCTGACTACTACTGTTGGTGCTTGGATTCCTTATATAGTCCCTGA 1074 0.4227 MDCRLECSETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPICGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVLDSPNSRRIHQENCQLSGINARILVGRFSNLGIRDNLTIGGGGRGPQVVALACKMVGGGSDGSLDLCARVCIIDEHENIIFHSYVKPSIPITNYRYESTGIRQEYLRDAMPMKQVQRKIQDFLCNGEPMWTIRARGGKARILVGHGLDHDLECLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVATMRLYMRMRSQVHKIEDYPLASDAQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSLYSP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1013g00004 357 Gene3D - 131 317 IPR036397 GO:0003676
Gabi1013g00004 357 SUPERFAMILY Ribonuclease H-like 146 302 IPR012337 -
Gabi1013g00004 357 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Gabi1013g00004 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Gabi1013g00004 357 FunFam RNA exonuclease 4 129 316 - -
Gabi1013g00004 357 Pfam Exonuclease 150 297 IPR013520 -
Gabi1013g00004 357 SMART exoiiiendus 132 306 IPR013520 -
Gabi1013g00004 357 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 352 IPR047021 GO:0004527
Gabi1013g00004 357 CDD REX4_like 134 297 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1013g00004 Gabi-Chr1013 151430 154170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1013g00004 1 354 C2H2 Transcription Factor Family AT3G27970 75.910 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1013g00004 - - aprc:113862359 685.256