Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1013g00003 ATGCTTCCACTGCAACTCACCACTCATCCTCATACCTCATCGCTATTACTGAGCAGCACCAACACTTGTTCCTTCTGTCCCACATCCCGTTCTCTCTTCAACCTTAAAAACAACAACAAGAAGAAGAAGCTATACCTTCTTCGGTCCACTATGGGAACCCTCACTCTTAGGGTTTTCGCGATGTCTGGTGACTCTGCATTCAAGATGAATCTCAACGAGTACCTCGTCACTCTCGAGAAGCCCCTCGGCATCCGATTCGCTCTCACCGCCGACGGCAAAATCATCGTCCACTCTCTCACCAAAGGAGGTAATGCGGAGAGGTCGAGGATAATTATGGTGGGTGATACTTTGAAGAAAGCTGGCGATTCGTCTCAGAATAGTCTCGTCGAGATTGAAGACGTTGGAGATACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCATTCAGCTACTCCATAAGATGAATGATCTTGAAATATTGTTTAATAGAGGTCGAGTTCCTTTTGTAACTTGGAACAAGACATTATTGGCATCAAATTTACAACCATCTAGTGAGAGCTCTGGGAATTCTGGATTTTTGGTGTTCAATTCAAAGTTTCTCAAATTGAAAGGAAGCAAGTTATTGGGCACTCAAAATCAACATGCCATCACCCACGGGGAGAGACACTTCTTTACTGAACACACAACACAACTTGCTTGTGTTTTTACTGAAGAAGCTTGTGGAGATGGAGATTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAAATGTACTATAATCATTCCCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGATCGTGTATACAAACAGAAGATGATGTGGAAACCTTGTCAGAAGTTGAGGGAGTCACTGCTATTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCCATCAATGATTCTTGTCAGAGGAATAATATTCTCATGATCAACTATCCTATCCGGGAGGGAGATTCATATGATATGAGAAAAAAACTCCCATTTTGTGTGGGGCTTTTATTACGGTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTAATTGCATACCTACATTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGAATGCACGGGTGCAGGCCTGACAGGCCTGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGAGGCAAACACGAAGGACCTCCCACACATGCAATCACATTTGTGTGGAATGGTCATGAGGGGGAGGATGTAACTTTGGTGGGAGACTTCACTGGAAATTGGAAAGAACCACTAAGGGCAAAGTACCAGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAACGGAGAATGGAAGCATTCAACTGCTTCACCGGCTGAGAGGGATGAAAGTGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTCCGGCCTTCTGTTCAGCACCAGCAGAAAGATGCCAACATTGTCAAGGTGATTGAAAGGCCTTTGAACGAAAAAGAGCGGTTTATGTTGGCAAAAGCAGCTCGTTGCATTGCTTTCTCTGTCTGTCCTATCAGATTAGCTCCCAAATAG 1767 0.4335 MLPLQLTTHPHTSSLLLSSTNTCSFCPTSRSLFNLKNNNKKKKLYLLRSTMGTLTLRVFAMSGDSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNSLVEIEDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKMNDLEILFNRGRVPFVTWNKTLLASNLQPSSESSGNSGFLVFNSKFLKLKGSKLLGTQNQHAITHGERHFFTEHTTQLACVFTEEACGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSEVEGVTAILNFQSGTEAENWGINVKSINDSCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHGCRPDRPAIAWATWDLIAMVERGKHEGPPTHAITFVWNGHEGEDVTLVGDFTGNWKEPLRAKYQGGSRHEVEVKLPQGKYYYKFIVNGEWKHSTASPAERDESGNVNNIIVIGETASVRPSVQHQQKDANIVKVIERPLNEKERFMLAKAARCIAFSVCPIRLAPK 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1013g00003 588 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 278 424 IPR029021 -
Gabi1013g00003 588 SUPERFAMILY E set domains 452 535 IPR014756 -
Gabi1013g00003 588 Gene3D Immunoglobulins 442 538 IPR013783 -
Gabi1013g00003 588 Gene3D Protein tyrosine phosphatase superfamily 281 548 IPR029021 -
Gabi1013g00003 588 ProSiteProfiles PDZ domain profile. 75 156 IPR001478 GO:0005515
Gabi1013g00003 588 CDD E_set_AMPKbeta_like_N 455 534 - -
Gabi1013g00003 588 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 51 586 - -
Gabi1013g00003 588 CDD DSP_laforin-like 287 433 IPR045204 GO:0019203
Gabi1013g00003 588 ProSiteProfiles Dual specificity protein phosphatase domain profile. 288 447 IPR020422 GO:0006470|GO:0008138
Gabi1013g00003 588 Pfam Glycogen recognition site of AMP-activated protein kinase 455 536 IPR032640 -
Gabi1013g00003 588 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 281 448 - -
Gabi1013g00003 588 SUPERFAMILY PDZ domain-like 79 169 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1013g00003 Gabi-Chr1013 82148 104522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1013g00003 140 588 Protein tyrosine phosphatase (PTP) family AT3G01510 69.042 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1013g00003 - - gmx:100814503 1026.54