Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1009g00013 ATGGATCCTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAGATTGGGGTTAATGTGCAGAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTATATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTAATTTAAAATGGTCCGGAGTTGAGGGCGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAGGACTTGTTTAACTATTGCAATAGAAAATTCTCTTTGAAAACAGTTTTGATGCTTGCAGATCAGCTAATTAACAGAGTTGATTACATGCATTCCCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAATTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTTGAATCACTTGGTTATGTGCTAATGTACTTTTTGAGAGGAAGTCTTCCTTGGCAGGGCTTGAAAGCTGGAACTAAAAAGCAGAAGTATGACAAGATAAGTGAGAAGAAGATGCTTACTTCAATAGAGGTCTTATGCAAGTCACATCCATCAGAATTCGCATCTTACTTCCAATATTGCCGATCATTACAGTTTGAAGATAAACCTAATTATTCATATCTTAAGAAACTCTTTCGAGACCTATTCATTAGAGAAGGTTGTCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGGAAACCAGTCTTAAACCCAGGACAATCTGGAGAGAGATTAGAACGGCCTTTGGTCGGACAAGACATTCGCGATAGATTATCAGGTGCAGTGGAGGCATTTTCAAGAAGGAATAGCTCTGGGCATGGTCTGCATACTGATCATTCCAAGCATAGGTCTTTAAATGATCAACCTGATTCTAATAGGGCTCGTAGTTCTTCTCGCAATGGCAGTGCCTCCAAAAGGCCTGTCATATCAAGCAGCAGACCAAGCACTTCTGCTGAACCTAGTGAAAGCCGTTCCAGTCGATTGGTCTCAAGCAATGGTCGTCTATCTACTACTCAGAGGATTCAATCTGGTTTTGAGTCCAAATCATCATTTACCCGTGGTGCAGGGACAAGAGGTGGTCGTGATGATGCACTCAGGAGCTTTGAGCTCTTGTCAATTGGTACAGGGAAAAGGAAATGA 1338 0.4148 MDPVIGGKFKLGRKIGVNVQSGEEVAVKLESVKTKHPQLLYESKLYMLLQGGTGIPNLKWSGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVDYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTSIEVLCKSHPSEFASYFQYCRSLQFEDKPNYSYLKKLFRDLFIREGCQFDYVFDWTILKYPQIGSSSRARPSGKPVLNPGQSGERLERPLVGQDIRDRLSGAVEAFSRRNSSGHGLHTDHSKHRSLNDQPDSNRARSSSRNGSASKRPVISSSRPSTSAEPSESRSSRLVSSNGRLSTTQRIQSGFESKSSFTRGAGTRGGRDDALRSFELLSIGTGKRK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1009g00013 445 SMART serkin_6 9 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00013 445 Pfam Protein kinase domain 17 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00013 445 CDD STKc_CK1_delta_epsilon 8 271 - -
Gabi1009g00013 445 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Gabi1009g00013 445 ProSiteProfiles Protein kinase domain profile. 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00013 445 MobiDBLite consensus disorder prediction 332 429 - -
Gabi1009g00013 445 MobiDBLite consensus disorder prediction 338 355 - -
Gabi1009g00013 445 SUPERFAMILY Protein kinase-like (PK-like) 4 280 IPR011009 -
Gabi1009g00013 445 FunFam Casein kinase 1-like protein 1 318 - -
Gabi1009g00013 445 PANTHER CASEIN KINASE-RELATED 20 384 - -
Gabi1009g00013 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Gabi1009g00013 445 MobiDBLite consensus disorder prediction 290 318 - -
Gabi1009g00013 445 MobiDBLite consensus disorder prediction 356 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1009g00013 Gabi-Chr1009 118134 128721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1009g00013 81 271 MAP Kinase Kinase Kinase AT1G62400 27.411 1.30e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi1009g00013 Pkinase 7.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1009g00013 K08960 - cave:132177205 747.658