Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1009g00012 ATGGATCCTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAGATTGGTAGTGGATCATTTGGCGAGCTTTTTTTGGGGGTTAATGTGCAGAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTATATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTAATTTAAAATGGTCCGGAGTTGAGGGCGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAGGACTTGTTTAACTATTGCAATAGAAAATTCTCTTTGAAAACAGTTTTGATGCTTGCAGATCAGCTAATTAACAGAGTTGATTACATGCATTCCCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAATTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTTGAATCACTTGGTTATGTGCTAATGTACTTTTTGAGAGGAAGTCTTCCTTGGCAGGGCTTGAAAGCTGGAACTAAAAAGCAGAAGTATGACAAGATAAGTGAGAAGAAGATGCTTACTTCAATAGAGGTCTTATGCAAGTCACATCCATCAGAATTCGCATCTTACTTCCAATATTGCCGATCATTACAGTTTGAAGATAAACCTAATTATTCATATCTTAAGAAACTCTTTCGAGACCTATTCATTAGAGAAGGTTGTCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGGAAACCAGTCTTAAACCCAGGACAATCTGGAGAGAGATTAGAACGGCCTTTGGTCGGACAAGACATTCGCGATAGATTATCAGGTGCAGTGGAGGCATTTTCAAGAAGGAATAGCTCTGGGCATGGTCTGCATACTGATCATTCCAAGCATAGGTCTTTAAATGATCAACCTGATTCTAATAGGGCTCGTAGTTCTTCTCGCAATGGCAGTGCCTCCAAAAGGCCTGTCATATCAAGCAGCAGACCAAGCACTTCTGCTGAACCTAGTGAAAGCCGTTCCAGTCGATTGGTCTCAAGCAATGGTCGTCTATCTACTACTCAGAGGATTCAATCTGGTTTTGAGTCCAAATCATCATTTACCCGTGGTGCAGGGACAAGAGGTGGTCGTGATGATGCACTCAGGAGCTTTGAGCTCTTGTCAATTGGTACAGGGAAAAGGAAATGA 1368 0.4152 MDPVIGGKFKLGRKIGSGSFGELFLGVNVQSGEEVAVKLESVKTKHPQLLYESKLYMLLQGGTGIPNLKWSGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVDYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTSIEVLCKSHPSEFASYFQYCRSLQFEDKPNYSYLKKLFRDLFIREGCQFDYVFDWTILKYPQIGSSSRARPSGKPVLNPGQSGERLERPLVGQDIRDRLSGAVEAFSRRNSSGHGLHTDHSKHRSLNDQPDSNRARSSSRNGSASKRPVISSSRPSTSAEPSESRSSRLVSSNGRLSTTQRIQSGFESKSSFTRGAGTRGGRDDALRSFELLSIGTGKRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1009g00012 455 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00012 455 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi1009g00012 455 PANTHER CASEIN KINASE-RELATED 13 394 - -
Gabi1009g00012 455 MobiDBLite consensus disorder prediction 300 328 - -
Gabi1009g00012 455 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi1009g00012 455 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Gabi1009g00012 455 FunFam Putative Casein kinase I 1 85 - -
Gabi1009g00012 455 MobiDBLite consensus disorder prediction 342 439 - -
Gabi1009g00012 455 MobiDBLite consensus disorder prediction 348 365 - -
Gabi1009g00012 455 CDD STKc_CK1_delta_epsilon 8 281 - -
Gabi1009g00012 455 FunFam Casein kinase 1-like protein 1 328 - -
Gabi1009g00012 455 SMART serkin_6 9 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00012 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi1009g00012 455 MobiDBLite consensus disorder prediction 366 430 - -
Gabi1009g00012 455 Pfam Protein kinase domain 10 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1009g00012 Gabi-Chr1009 118134 128721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1009g00012 1 245 EF-hand Containing Proteins AT2G38910 25.795 2.88e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi1009g00012 Pkinase 3.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1009g00012 K08960 - cave:132177205 774.237