Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1009g00011 ATGGATCCTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAGATTGGTAGTGGATCATTTGGCGAGCTTTTTTTGGGGGTTAATGTGCAGAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTATATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTAATTTAAAATGGTCCGGAGTTGAGGGCGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAGGACTTGTTTAACTATTGCAATAGAAAATTCTCTTTGAAAACAGTTTTGATGCTTGCAGATCAGCTAATTAACAGAGTTGATTACATGCATTCCCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAATTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTTGAATCACTTGGTTATGTGCTAATGTACTTTTTGAGAGGAAGTCTTCCTTGGCAGGGCTTGAAAGCTGGAACTAAAAAGCAGAAGTATGACAAGATAAGTGAGAAGAAGATGCTTACTTCAATAGAGGTCTTATGCAAGTCACATCCATCAGAATTCGCATCTTACTTCCAATATTGCCGATCATTACAGTTTGAAGATAAACCTAATTATTCATATCTTAAGAAACTCTTTCGAGACCTATTCATTAGAGAAGGTTGTCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGGAAACCAGTCTTAAACCCAGGACAATCTGGAGAGAGATTAGAACGGCCTTTGGTCGGACAAGACATTCGCGATAGATTATCAGGTGCAGTGGAGGCATTTTCAAGAAGGAATAGCTCTGGGCATGGTCTGCATACTGATCATTCCAAGCATAGGTCTTTAAATGATGTGCCATCTTCAAAAGTTGTGCAACCTGATTCTAATAGGGCTCGTAGTTCTTCTCGCAATGGCAGTGCCTCCAAAAGGCCTGTCATATCAAGCAGCAGACCAAGCACTTCTGCTGAACCTAGTGAAAGCCGTTCCAGTCGATTGGTCTCAAGCAATGGTCGTCTATCTACTACTCAGAGGATTCAATCTGGTTTTGAGTCCAAATCATCATTTACCCGTGGTGCAGGGACAAGAGGTGGTCGTGATGATGCACTCAGGAGCTTTGAGCTCTTGTCAATTGGTACAGGGAAAAGGAAATGA 1389 0.4154 MDPVIGGKFKLGRKIGSGSFGELFLGVNVQSGEEVAVKLESVKTKHPQLLYESKLYMLLQGGTGIPNLKWSGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVDYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTSIEVLCKSHPSEFASYFQYCRSLQFEDKPNYSYLKKLFRDLFIREGCQFDYVFDWTILKYPQIGSSSRARPSGKPVLNPGQSGERLERPLVGQDIRDRLSGAVEAFSRRNSSGHGLHTDHSKHRSLNDVPSSKVVQPDSNRARSSSRNGSASKRPVISSSRPSTSAEPSESRSSRLVSSNGRLSTTQRIQSGFESKSSFTRGAGTRGGRDDALRSFELLSIGTGKRK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1009g00011 462 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Gabi1009g00011 462 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00011 462 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi1009g00011 462 MobiDBLite consensus disorder prediction 300 328 - -
Gabi1009g00011 462 MobiDBLite consensus disorder prediction 363 437 - -
Gabi1009g00011 462 FunFam Casein kinase 1-like protein 1 328 - -
Gabi1009g00011 462 PANTHER CASEIN KINASE-RELATED 13 407 - -
Gabi1009g00011 462 MobiDBLite consensus disorder prediction 348 362 - -
Gabi1009g00011 462 FunFam Putative Casein kinase I 1 85 - -
Gabi1009g00011 462 CDD STKc_CK1_delta_epsilon 8 281 - -
Gabi1009g00011 462 Pfam Protein kinase domain 10 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00011 462 SMART serkin_6 9 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00011 462 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi1009g00011 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi1009g00011 462 MobiDBLite consensus disorder prediction 343 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1009g00011 Gabi-Chr1009 118134 128721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1009g00011 1 245 EF-hand Containing Proteins AT2G38910 25.795 2.92e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi1009g00011 Pkinase 3.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1009g00011 K08960 - cave:132177205 790.801