Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1009g00005 ATGGATCCTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAGATTGGTAGTGGATCATTTGGCGAGCTTTTTTTGGGGGTTAATGTGCAGAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTATATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTAATTTAAAATGGTCCGGAGTTGAGGGCGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAGGACTTGTTTAACTATTGCAATAGAAAATTCTCTTTGAAAACAGTTTTGATGCTTGCAGATCAGCTAATTAACAGAGTTGATTACATGCATTCCCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAATTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTTGAATCACTTGGTTATGTGCTAATGTACTTTTTGAGAGGAAGTCTTCCTTGGCAGGGCTTGAAAGCTGGAACTAAAAAGCAGAAGTATGACAAGATAAGTGAGAAGAAGATGCTTACTTCAATAGAGGTCTTATGCAAGTCACATCCATCAGAATTCGCATCTTACTTCCAATATTGCCGATCATTACAGTTTGAAGATAAACCTAATTATTCATATCTTAAGAAACTCTTTCGAGACCTATTCATTAGAGAAGGTTGTCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGAGTGAGTTCGCATTTTCGACAGCCAAGTGGGAAACCAGTCTTAAACCCAGGACAATCTGGAGAGAGATTAGAACGGCCGTCAGACATTCGCGATAGATTATCAGGTGCAGTGGAGGCATTTTCAAGAAGGAATAGCTCTGGGCATGGTCTGCATACTGATCATTCCAAGCATAGGTCTTTAAATGATGTGCCATCTTCAAAAGTTGTGGTTAGTCAACCTGATTCTAATAGGGCTCGTAGTTCTTCTCGCAATGGCAGTGCCTCCAAAAGGCCTGTCATATCAAGCAGCAGACCAAGCACTTCTGCTGAACCTAGTGAAAGCCGTTCCAGTCGATTGGTCTCAAGCAATGGTCGTCTATCTACTACTCAGAGGATTCAATCTGGTTTTGAGTCCAAATCATCATTTACCCGTGGTGCAGGGACAAGAGGTGGTCGTGATGATGCACTCAGGAGCTTTGAGCTCTTGTCAATTGGTACAGGGAAAAGGAAATGA 1407 0.4158 MDPVIGGKFKLGRKIGSGSFGELFLGVNVQSGEEVAVKLESVKTKHPQLLYESKLYMLLQGGTGIPNLKWSGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVDYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTSIEVLCKSHPSEFASYFQYCRSLQFEDKPNYSYLKKLFRDLFIREGCQFDYVFDWTILKYPQIGSSSRARVSSHFRQPSGKPVLNPGQSGERLERPSDIRDRLSGAVEAFSRRNSSGHGLHTDHSKHRSLNDVPSSKVVVSQPDSNRARSSSRNGSASKRPVISSSRPSTSAEPSESRSSRLVSSNGRLSTTQRIQSGFESKSSFTRGAGTRGGRDDALRSFELLSIGTGKRK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1009g00005 468 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00005 468 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi1009g00005 468 SMART serkin_6 9 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00005 468 MobiDBLite consensus disorder prediction 367 443 - -
Gabi1009g00005 468 PANTHER CASEIN KINASE-RELATED 13 413 - -
Gabi1009g00005 468 MobiDBLite consensus disorder prediction 346 454 - -
Gabi1009g00005 468 Pfam Protein kinase domain 10 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1009g00005 468 MobiDBLite consensus disorder prediction 352 366 - -
Gabi1009g00005 468 CDD STKc_CK1_delta_epsilon 8 281 - -
Gabi1009g00005 468 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi1009g00005 468 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Gabi1009g00005 468 MobiDBLite consensus disorder prediction 306 333 - -
Gabi1009g00005 468 FunFam Putative Casein kinase I 1 85 - -
Gabi1009g00005 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi1009g00005 468 FunFam Casein kinase 1-like protein 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1009g00005 Gabi-Chr1009 118134 128721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1009g00005 8 213 MAP Kinase Kinase Kinase AT3G06030 26.389 2.96e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi1009g00005 Pkinase 3.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1009g00005 K08960 - mnt:21404312 771.541