Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1008g00009 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCACCAACAGCAACCAAATAATCAACAAGGCAACACTGGTGGTGCTAGCTCTCATCATCTTCTTCTTCCACCACCACCACCTCCACCACCGCCAACACAACCTCATGGAAGCGGCGGTGGATCCCGGTCTATACGGCCGGGATCGATGGCGGATAGGGCAAGGATGGAGCACATACCTATGCAAGAAGCTCCACAAAAATGTCCGAGATGTGAATCCACAAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGACCTGTAGAAGGTACTGGACAAGAGGCGGCGCCCTGAGGAATGTCCCGGTTGGCGGTGGCTGCCGGAGGAACAAGAGGAGCAAAGGGGGAAGCACCAGCAGCTCAAAATCATCGCCGGCGAGCTCCGATCGCCAAACGGCAAGTGCGGCTTCCACTAATAGTACTGCCTCCGGTGCTGACATGGCAGGCCTCGGGTCTCCAGTGCCGCCGCCACCTCTAAGGTTCATGGCTCCAATGCATCAATTTAGTGATCACCACCTTGCTGGTGGTGATATAGCCTTAAACTATGGCTTGAACTTTAGCTCAATTTCAAGTCCAATGGGAGGAGTAGGTGTAGGAGACTTGAATTTTCACATAGGAAACCCTTTTGGTGGAGCAAGTGGTGTTGGTGTTGGTGGTTCTATCTTATCTAGTTCTAATTTGGAGCAATGGAGGGTTCCACAAACACACCAATTTCCCTTCTTGTCTAGTTTGGAAGCTTCTTCTCATGGATTATACCCATTTGAAGGTGGTAGTAGTGGAAATAATCAGGCACAAGCTGGGTATAGTGGTGCACCCAAGGTATCAACTTCAGTGAAAATGGAAGAAAATCAAGAACTTGGTTTGTCTAGACAGTTTTTGGGAATGAATAACCCTACAAGTGAACAATATTGGAGTACTGGTGGTGGTGCCACTGCAGCTTGGACAGATCTTTCTGGTTTTACCTCTTCTTCTGCTGCTAACAATCAACTATAG 1059 0.4863 MVYTSIPAYIDPANWHQQQPNNQQGNTGGASSHHLLLPPPPPPPPPTQPHGSGGGSRSIRPGSMADRARMEHIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSTSSSKSSPASSDRQTASAASTNSTASGADMAGLGSPVPPPPLRFMAPMHQFSDHHLAGGDIALNYGLNFSSISSPMGGVGVGDLNFHIGNPFGGASGVGVGGSILSSSNLEQWRVPQTHQFPFLSSLEASSHGLYPFEGGSSGNNQAQAGYSGAPKVSTSVKMEENQELGLSRQFLGMNNPTSEQYWSTGGGATAAWTDLSGFTSSSAANNQL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1008g00009 352 MobiDBLite consensus disorder prediction 35 50 - -
Gabi1008g00009 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 268 IPR045174 GO:0003700|GO:0006355
Gabi1008g00009 352 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Gabi1008g00009 352 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
Gabi1008g00009 352 MobiDBLite consensus disorder prediction 13 62 - -
Gabi1008g00009 352 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Gabi1008g00009 352 MobiDBLite consensus disorder prediction 134 168 - -
Gabi1008g00009 352 MobiDBLite consensus disorder prediction 13 31 - -
Gabi1008g00009 352 MobiDBLite consensus disorder prediction 121 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1008g00009 Gabi-Chr1008 98354 100126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1008g00009 1 345 C2C2-Dof Transcription Factor Family AT2G37590 38.997 2.81e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi1008g00009 zf-Dof 7.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1008g00009 - - gmx:100796820 400.593