Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1003g00015 ATGAAGGAGAGGCAACGTTGGAAAGCTGAAGAGGATGCTTTATTATGTGCTTATGTCAGACAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCACTTAACAGAGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATTAAAAAAGGATCTCTAACTGAAGAAGAACAGCGTCTGGTGATTCGCCTTCAAGCAAAACACGGGAACAAGTGGAAGAAGATTGCTGCAGAAGTACCGGGTCGCACTGCCAAGAGGTTAGGCAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAGAGAGAAAAACAGGAGATTAACAACAGAACAGTTGGTTTAGTTGACAACACCAAATACGATCATATACTTGAAACTTTTGCTGAGAAACTAGTGAAAGAACACCCTTCACCATCATATCTTATGGCTGCTTCTAATGCACCAGCACCTGCATCAGCTTTGCTTCCTCCTTGGCTTTCAAACACTAACAATAATCAAGCTGTTAGGCCACCTTCCCCTTCTGTGACACTAAGTCTCTCTCCCTCCACATGGTTGCAACACGAAAGAGGACCAGAGAATGCTCCTCTTGTTTTGGGGAATGTAACACCTAACATGCTCATGTCTGAGTTAGGGGAGTGTTGTAAAGAGTTGGAAGAAGGGCATCGCGCTTGGATGGCGCATAAGAAGGAGGCAGCATGGAGGTTAAGAAGAGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGAGTCGAATGAGGGAGAAGATTGAAGAAATGGAAGCAAAGATTAAAGCTCTTAGGGAAGAACAGAATGCTGCTTTGGATAGAATTGAAGCAGATTACAAGGAACAGTTAACTGGATTGCGGAGAGATGCAGAAACCAAGGAGCAGAAGTTGGCTGAGCAATGGAATACAAAGCACTTGCGCCTTGTAAAGTTCATGGAGCAAGTGGGATGCAGACCTTGGCTTGCTGAGCCTAATGGGAGATGA 1005 0.4517 MKERQRWKAEEDALLCAYVRQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINNRTVGLVDNTKYDHILETFAEKLVKEHPSPSYLMAASNAPAPASALLPPWLSNTNNNQAVRPPSPSVTLSLSPSTWLQHERGPENAPLVLGNVTPNMLMSELGECCKELEEGHRAWMAHKKEAAWRLRRVELQLESEKASRMREKIEEMEAKIKALREEQNAALDRIEADYKEQLTGLRRDAETKEQKLAEQWNTKHLRLVKFMEQVGCRPWLAEPNGR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1003g00015 334 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Gabi1003g00015 334 Pfam Myb-like DNA-binding domain 7 67 - -
Gabi1003g00015 334 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 329 - -
Gabi1003g00015 334 Gene3D - 4 58 - -
Gabi1003g00015 334 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Gabi1003g00015 334 CDD SANT 6 53 IPR001005 -
Gabi1003g00015 334 Gene3D - 62 120 - -
Gabi1003g00015 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Gabi1003g00015 334 Coils Coil 244 281 - -
Gabi1003g00015 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Gabi1003g00015 334 CDD SANT 63 104 IPR001005 -
Gabi1003g00015 334 FunFam MYB-related transcription factor 4 58 - -
Gabi1003g00015 334 SMART sant 3 55 IPR001005 -
Gabi1003g00015 334 SMART sant 58 106 IPR001005 -
Gabi1003g00015 334 Coils Coil 283 307 - -
Gabi1003g00015 334 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1003g00015 Gabi-Chr1003 155836 158857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1003g00015 1 325 MYB Transcription Factor Family AT2G37630 63.736 9.11e-154 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1003g00015 Myb_DNA-bind_6 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1003g00015 K09422 - zju:107430642 501.13