Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1003g00013 ATGGGTGCTTGCTGGAGCAATAGGATTAAGGCTGTGACTCCTTCAAATACAGGGTTCACTTCTAGAAGTGTGAGCAGAGATGGCTATGACATCAGCTCAAATAGCAGGAGCTCATCAGCCTCCATACCCCTGACTCCTCGGAGTGAGGGTGAGATCTTACAATCTTCCAATATGAAAAGCTTCAGCTATAGTGAGCTAAGAACAGCCACAAGAAATTTCCGACCAGACAGTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTTTAAGGGCTGGATTGATGAGCATTTACTTGCTGCTACCAGGCCAGGAACAGGCATGGTTATTGCTGTGAAGAGACTTAATCAAGACGGGTTTCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTACAGCATCCTAATCTTGTCAAGTTGATAGGTTACTGCTTAGAGGATGAGCATCGGCTTCTAGTTTATGAATTTATGCCTAAGGGCAGTGTGGAGAATCATTTGTTCAGGAGAGGATCATATTTTCAGCCACTCTCTTGGACTTTAAGATTGAAAATAGCCCTTGGGGCAGCAAAGGGTCTTGCTTTTCTCCACGGCACAGAAACTAAAGTCATATACCGCGACTTTAAGACTTCGAATATCCTGCTTGATACTAACTATAATGCCAAACTTTCTGATTTTGGGCTGGCCAGAGATGGACCAACTGGTGATAAGAGCCATGTTTCTACTAGGGTCATGGGAACCCATGGATATGCAGCACCCGAATATCTAGCAACAGGCCATCTCACTGCCAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGTTATCAGGAAGACGTGCTATAGACAAGAACAGGCCATCTGGAGAACATAACCTAGTTGAATGGGCAAAACCTTATCTTTCTAACAAACGTAGAGTTTTTCGCGTAATGGATAGCCGTCTTGAAGGCCAGTATTCCCTAACTCGAGCTCAAAGTGCAGCCACACTTGCTTTTCAATGTCTTGCAGTAGATCCTAAATACAGACCCACTATGGATGAGATAGTAAAAGCATTGGAGCAGCTACAGGAATCAAAGGACAAGTTGAAAAATGTTAATCAGAAAGAGCATAGAGTACGTGGTTCTGGCCTTGGCCATCCTAATGGGCTCTCTCCATATTGCAAAGGAAGTGTAGATGCTCCCAAAAAGATGGTTTATCCTAGACCTTCTGCTTCTATGCTTAAGTGA 1236 0.4377 MGACWSNRIKAVTPSNTGFTSRSVSRDGYDISSNSRSSSASIPLTPRSEGEILQSSNMKSFSYSELRTATRNFRPDSVLGEGGFGSVFKGWIDEHLLAATRPGTGMVIAVKRLNQDGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDEHRLLVYEFMPKGSVENHLFRRGSYFQPLSWTLRLKIALGAAKGLAFLHGTETKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSNKRRVFRVMDSRLEGQYSLTRAQSAATLAFQCLAVDPKYRPTMDEIVKALEQLQESKDKLKNVNQKEHRVRGSGLGHPNGLSPYCKGSVDAPKKMVYPRPSASMLK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1003g00013 411 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Gabi1003g00013 411 FunFam Probable serine/threonine-protein kinase PBL8 159 374 - -
Gabi1003g00013 411 MobiDBLite consensus disorder prediction 370 389 - -
Gabi1003g00013 411 SUPERFAMILY Protein kinase-like (PK-like) 52 357 IPR011009 -
Gabi1003g00013 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gabi1003g00013 411 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Gabi1003g00013 411 Coils Coil 348 375 - -
Gabi1003g00013 411 FunFam Serine/threonine-protein kinase BIK1 40 158 - -
Gabi1003g00013 411 CDD STKc_IRAK 79 358 - -
Gabi1003g00013 411 MobiDBLite consensus disorder prediction 16 48 - -
Gabi1003g00013 411 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1003g00013 411 PANTHER OS01G0588500 PROTEIN-RELATED 39 359 - -
Gabi1003g00013 411 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Gabi1003g00013 411 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1003g00013 Gabi-Chr1003 122250 126330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1003g00013 51 363 Glycoside Hydrolase AT3G07070 50.000 5.47e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1003g00013 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1003g00013 - - gmx:100795058 707.983