Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1003g00012 ATGGGTCCTCTCTGCATTGCATCATTGGTCACTCTTTTTGTTGCAACAAGTGCTCGAATTCCGGGTGTTTACACCGGTGGCTCATGGCAGAGTGCCCATGCCACTTTCTACGGTGGCAGTGATGCCTCTGGAACAATGGGTGGTGCATGTGGATATGGGAATTTGTATAGTCAAGGGTATGGTGTGAACAGTGCAGCACTGAGCACAGCACTTTTCAACAATGGCTTGAGTTGTGGTGCATGCTTCGAGATCAAGTGTGACCAAGATCCAACATGGTGCAACCCTGGAAACCCTTACATCACCATCACCGCCACAAACTTTTGTCCTCCGAATTTGGCTCTACCCAGTGACAATGGTGGCTGGTGCAACCCACCACGCCCTCACTTTGATCTCGCCATGCCAATGTTCCTCAAGATCGCTCAGTACCGTGCAGGAATCGTCCCCGTCAGTTACCGCCGGGTCCCATGCCGAAAGAACGGTGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCAACTTGGTTTTGGTAACCAACGTTGCTGGTGCAGGGGATATCGTGCACGTTAGTGTGAAAGGAACCAAGACAGGGTGGAACAGCATGAGCCGAAATTGGGGGCAAAATTGGCAATCCAATGCTGATTTAATGGGCCAGGCCCTTTCCTTTAGAGTCACCGGCAGTGACAGACGCACCTCAACCTCCATGAACGTGGCATCACCTAATTGGCAGTTTGGTCAAACCTTCACGGGCAAGAATTTCCGTGTCTAA 768 0.5052 MGPLCIASLVTLFVATSARIPGVYTGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNSAALSTALFNNGLSCGACFEIKCDQDPTWCNPGNPYITITATNFCPPNLALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKNGGIRFTINGFRYFNLVLVTNVAGAGDIVHVSVKGTKTGWNSMSRNWGQNWQSNADLMGQALSFRVTGSDRRTSTSMNVASPNWQFGQTFTGKNFRV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1003g00012 255 FunFam Expansin 161 253 - -
Gabi1003g00012 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Gabi1003g00012 255 FunFam Expansin 18 157 - -
Gabi1003g00012 255 PANTHER EXPANSIN-A15 13 253 IPR002963 GO:0009664
Gabi1003g00012 255 Gene3D - 15 157 IPR036908 -
Gabi1003g00012 255 Pfam Lytic transglycolase 65 151 IPR009009 -
Gabi1003g00012 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Gabi1003g00012 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Gabi1003g00012 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Gabi1003g00012 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Gabi1003g00012 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Gabi1003g00012 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gabi1003g00012 255 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Gabi1003g00012 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Gabi1003g00012 255 Gene3D - 158 253 IPR036749 -
Gabi1003g00012 255 CDD DPBB_EXPA_N 29 156 - -
Gabi1003g00012 255 Pfam Expansin C-terminal domain 162 238 IPR007117 -
Gabi1003g00012 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 161 IPR007112 -
Gabi1003g00012 255 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Gabi1003g00012 255 SUPERFAMILY Barwin-like endoglucanases 28 179 IPR036908 -
Gabi1003g00012 255 SMART dpbb_1 64 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1003g00012 Gabi-Chr1003 117172 119650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1003g00012 11 255 Expansin Gene Family AT2G39700 83.265 6.06e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1003g00012 - - gmx:100803595 495.738