Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1002g00020 ATGGCTTCGAACCAATTTGAAAGTGCAGGATCCAGCCCGGGTCGGAAGGTTCGGGTCGTGGGCAAGGTCCGAGGATTTTCGGGTACGGAGGTCAATTCTGAAACTGGGTTTTCGAGGACGGTGGAGTGGGTTTCAGTGAACAGGGAGAATTCCGAGGATGTCACCATCTCGTTCGGAGAACAATCTTCTAGTCGTTATTTGATGGACTATTGCTATAAGGAACATGAAGAAAATGAAATGGTGTATTCAAGAGAGGTGAAGCCTCTTGTTTCTGCAGTTTTTGAAGGTCATAACAGCACTGTTATTGCTCATGGAGCTAAAGGAAGTGGAAAGACCCACTTAATTCAGGGTTCTGCTGAGAAACCAGGTCTGGCAATGCTTGCTGTGGCCGAGTTTCTTTCAATGGCTGAGAAATATGGGAAATCTATAGCGATTTCTTTCTACGAGGTTGATCATCAGGAGCATGCTGTTGATTTATTAAATCCAGAACAACCTCCAATTTTGGTTTTTGAAGATCGTGGCAGAATTCAGTTTAAAGGACTTACTCAAACTCCTGTGAAATCCATTTCGGAGTTTCAGAATTTGTACTTCACTGCATGTTCTGCACAAAAGGCAGCTCCCAAAAAAGGCCATGAACGTGCTCGGAGAGGCCACATGGGATTAATTGTGCATGTCATTTCCCAGAATGAAAGCGTAGAAGGTCTTGTGAGCAAAATGAATTTTGTTGATTTGGCAGGTTATGAAGATGTTAGAAAGAAAAGTAATGATGGCTCTTGCCTTGCTGAGACTACCAAACTTAACAAGTCAATTTATGCCTTACTGAATGTTTGTCATGCTTTGAGCACAAATGAATGTCGTGTTCCCTACAGGGAAAGCAAACTTACACGAATGCTGCAGGATTCCTTGAGGGGGTCTAGCAAAATTTTGTTAATTTCATGCTTGAACCCAATATTTTGCCAAGACACAATTTACATGGTAAGCTTAGCATCACGGTCATGTCAAAGGATTTATCGGACATCCTTAGATTCTATGAAGAAAAGTGAAAGACAGATGGTGACTTCTCATAAGAAGAACCATATACCCAAAAGTGTTTCAGCCTCTGCAAAGAAATTACATGGTTCCAAATCTCATATATATGAAAAGAAATCTGTTGTTCCTATGAAGTCTGCAATGAAAGGAAGGAAATTGTTTGATGAAGCCAGCCATTCTGTTGCTAAAACTGAGAAGGAAATTTCCATTGCTCATGTTACCAAAACATCAGAACCTTTATTGGACAATTCATTATCAGAAGCTGAGAGTCATGTTGAGCTCAACTCTAGGGTGGAAAAGGATGGCTCGTCTTTAAATGCTAGCAGTGAAGTGGAATCCAATCACCTAGTTGAAAAGGGTATTTCTGTTGATAGAGAGGATCATCAAGAGAAACAATCCCCTTGTGCCATTAATTACTCCAAAGCATTGTCAATAGTTGAGGAAGGCCATAACATGAACAAGGAGAACGACATTTTAATGGCAAATGATGGTTCACCACCCATTAGTTCTCAACTGCGTGATCTTTCTAACAGTCTTAAATTGCTCTGTTCATCAACCCCATTATGCACGCAGATACCAGAAAAGGAATCCACTTTGCTTGATGATCAGATATCTGCTGATATTGTGGAACCAAAAACTCCTATAATTGAACAAAATATGAGCAATAATGATAGATGGGATGTAATGAATGCCAGAAGTCCTTGGGAAACATTCAGCATGCGTGGTTCTGGAATGAAGAATTCTCTTGTTCATGAATACCTGCGGTTTTTAAACACAGCTAACAAGGAAGAACTGAAAAAATTAAAGGGAATTGGGGAGAAACGAGCAACCTTCATACTTGAGCTTCGGGAAGAATCTCCAGAACCTTTCAAGAGTCTTGATGATTTAAAGGATATTGGACTTTCAGCAAAGCAGATCAAGGGAATTATGAAGAAGGAAGTTGGAGAGCTTTTCAATTAG 1989 0.4042 MASNQFESAGSSPGRKVRVVGKVRGFSGTEVNSETGFSRTVEWVSVNRENSEDVTISFGEQSSSRYLMDYCYKEHEENEMVYSREVKPLVSAVFEGHNSTVIAHGAKGSGKTHLIQGSAEKPGLAMLAVAEFLSMAEKYGKSIAISFYEVDHQEHAVDLLNPEQPPILVFEDRGRIQFKGLTQTPVKSISEFQNLYFTACSAQKAAPKKGHERARRGHMGLIVHVISQNESVEGLVSKMNFVDLAGYEDVRKKSNDGSCLAETTKLNKSIYALLNVCHALSTNECRVPYRESKLTRMLQDSLRGSSKILLISCLNPIFCQDTIYMVSLASRSCQRIYRTSLDSMKKSERQMVTSHKKNHIPKSVSASAKKLHGSKSHIYEKKSVVPMKSAMKGRKLFDEASHSVAKTEKEISIAHVTKTSEPLLDNSLSEAESHVELNSRVEKDGSSLNASSEVESNHLVEKGISVDREDHQEKQSPCAINYSKALSIVEEGHNMNKENDILMANDGSPPISSQLRDLSNSLKLLCSSTPLCTQIPEKESTLLDDQISADIVEPKTPIIEQNMSNNDRWDVMNARSPWETFSMRGSGMKNSLVHEYLRFLNTANKEELKKLKGIGEKRATFILELREESPEPFKSLDDLKDIGLSAKQIKGIMKKEVGELFN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1002g00020 662 SUPERFAMILY RuvA domain 2-like 597 655 IPR010994 -
Gabi1002g00020 662 PRINTS Kinesin heavy chain signature 238 256 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1002g00020 662 PRINTS Kinesin heavy chain signature 287 308 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1002g00020 662 PRINTS Kinesin heavy chain signature 96 117 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1002g00020 662 FunFam Kinesin-like protein KIN-10C 586 660 - -
Gabi1002g00020 662 Pfam Helix-hairpin-helix motif 600 648 - -
Gabi1002g00020 662 Gene3D Kinesin motor domain 2 336 IPR036961 -
Gabi1002g00020 662 ProSiteProfiles Kinesin motor domain profile. 16 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1002g00020 662 Gene3D - 588 660 - -
Gabi1002g00020 662 SMART kinesin_4 14 340 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1002g00020 662 Pfam Kinesin motor domain 39 331 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1002g00020 662 PANTHER KINESIN-RELATED 52 489 IPR027640 GO:0003777|GO:0007018
Gabi1002g00020 662 FunFam Kinesin-like protein KIN-10C 6 336 - -
Gabi1002g00020 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1002g00020 Gabi-Chr1002 106805 111617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1002g00020 66 316 Calmodulin-binding Proteins AT5G65930 29.044 8.66e-27 115