Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1002g00019 ATGTCAGTTGCCAAGCTCAAGGTCTCTGGCTCTCCAGATATCATGAAAACAGAAGACAGAATAGATACCATAATCAGACAAGCAATTGGCAAAGAGCCTTTCCTTGCTTTTCCAAGGGCTGGTGATAGCCCTGTACAGTGGATTCAACTACTTCATGCTTTAGATCAGCAAGGTGTTAGCAATTCTCTTTCAGAACTTCCTGGGTGGCCATTGCTTTCTCCTCTGAAGGTTCAGTTGCAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATACGTGTACACCACCGGTTGAAAAAACTCGATAAGGATTCTACAAAAACTAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTATCATTCAATAATGTGATGCTGGAGGAAGTTCCGGGGTCCTCAATTTTGCAAGCCCTGACAACTCTTATTCAGAAACAAGGATTTTATTCACTTCCTCAGTATTATCTGAGGGCTGGTGCAGCCCTTTTGGATATTGTTCAGTCTAAACCTTCCAGTTTTCCTATATCTTCCCAGGAGTTGTTCAGTATCCTTGACGATGCTAGTGAAAAAACATGTTTTTGGGGGACAACAGTGTCAATGCAAAGATATGTTTTCGATGGAGAGGCTGGAAAAATTGGTCTTGAACCGAAAAACCTAGTTGCTACCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCGGACAAGGATGCTGAAGCACTGAGGTACCAGAAGCAATTGGTGGAGGAGGAAGAGGCTGCTCAGAAAAGACAAGCTAAGATTTTGGAGAGGAAACGCCAGAAAAAGCTCAGGCAAAAAGAACAGAAGGCTAGGGAACAAAGACACAAGGATGAGGCAGAAATTAAAGGGAATATTGGCTGTACTTTAAAGGCTTTATCAACAGCAGAAGCATCTTTGGATACATATTATTTTGTAGCTCATAATCCAGATACATTTGCAGATAACGCTCCTTCAGATGTACCTTTACAATGCCCTGACACTAGTGAAAGAATAGATGGGGATACTCAGTCAGGGTATGATTTTGGCACTGATCAGAATCTTGAGCGACAGTCAGCACGTGGACATAATCATCGGCGCTTAGTAGTTGCCAGACGGCTGGGGCTGCCAAAACCACAATGGGCTGTAGCCAATGAATTGCACACAAACCAGAGTTCTCCAACTTCAAAACTTGAAGTCTTTCAGAAATATAGAAACCGCCACGATCAAAGATTAGGTGCTATAGATACTGGTAGTAAAGTATGGAGTCGAAAGCCTAAACAAGAAATTGACATGTTGGTTTTAAAAACCATAGTAGAGAAAGAACCAGACCTAGTTAAGAATTATGAAGTTTTGATAGGGTCAATATCTGTTAATCTTGGCAATTGCAGCCAATCAGAGGGTTATACAGTGGCATCTCGAGAGGATTGCATGGTTGAGAATGTGGCCAAGCAGAATGGTTCTCAGGATAAGCCAATGAAACCTGATTTTGTCATGAGTGACAACAATAGGTCAACAGTTAAGCTTTGGAGGCGCCGGCATGAAACTAAAGATCCATTTCCAGTTAAAAGCGGTGGAACAGAATCTGATGCAGTCTATGGAAATGGAGATTGTCAAAACTTATCAGGTCCAAGTTGTTTAAGGTCGTGTAGTATAGATGGTAGTGATATTGATGATGAAAACAATTTCTCCCATCTAGAGGGTAGAGTGGATCCGGGAAGCTTACGGTTATCGAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTTATCAAATCATGTGAAATTTGTTGTTTCCCCTGATTCTGAACCTACTGGATGTCAGGAGATACAGGATTTTGAAATAGGAGCATGTCAATCTTCTGATGTTGACAGATGCAAAATTCTTTCAAACTCAGAAAACAGGTTGCCTGTAACCTCCAGAATTACTAAATCCAAACCCAAAATGAAGCCTGGAAAGGGAACCAAGATAAAGTATGTTGCAAATCAAAAAATAGCTACCTAA 2070 0.4145 MSVAKLKVSGSPDIMKTEDRIDTIIRQAIGKEPFLAFPRAGDSPVQWIQLLHALDQQGVSNSLSELPGWPLLSPLKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSTKTRDLLGAYWDKLSVEEAKEVVSFNNVMLEEVPGSSILQALTTLIQKQGFYSLPQYYLRAGAALLDIVQSKPSSFPISSQELFSILDDASEKTCFWGTTVSMQRYVFDGEAGKIGLEPKNLVATTSFLLEQKLVKAWLADKDAEALRYQKQLVEEEEAAQKRQAKILERKRQKKLRQKEQKAREQRHKDEAEIKGNIGCTLKALSTAEASLDTYYFVAHNPDTFADNAPSDVPLQCPDTSERIDGDTQSGYDFGTDQNLERQSARGHNHRRLVVARRLGLPKPQWAVANELHTNQSSPTSKLEVFQKYRNRHDQRLGAIDTGSKVWSRKPKQEIDMLVLKTIVEKEPDLVKNYEVLIGSISVNLGNCSQSEGYTVASREDCMVENVAKQNGSQDKPMKPDFVMSDNNRSTVKLWRRRHETKDPFPVKSGGTESDAVYGNGDCQNLSGPSCLRSCSIDGSDIDDENNFSHLEGRVDPGSLRLSSHAAKAFLAQRWKEAILSNHVKFVVSPDSEPTGCQEIQDFEIGACQSSDVDRCKILSNSENRLPVTSRITKSKPKMKPGKGTKIKYVANQKIAT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1002g00019 689 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Gabi1002g00019 689 MobiDBLite consensus disorder prediction 281 302 - -
Gabi1002g00019 689 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Gabi1002g00019 689 SMART c2h2final6 80 102 IPR013087 -
Gabi1002g00019 689 Coils Coil 251 305 - -
Gabi1002g00019 689 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1002g00019 Gabi-Chr1002 85960 97598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1002g00019 19 687 C2H2 Transcription Factor Family AT4G25610 38.719 8.33e-133 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1002g00019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1002g00019 - - gmx:100809067 983.015