Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1002g00018 ATGTCAGTTGCCAAGCTCAAGGTCTCTGGCTCTCCAGATATCATGAAAACAGAAGACAGAATAGATACCATAATCAGACAAGCAATTGGCAAAGAGCCTTTCCTTGCTTTTCCAAGGGCTGGTGATAGCCCTGTACAGTGGATTCAACTACTTCATGCTTTAGATCAGCAAGAACTTCCTGGGTGGCCATTGCTTTCTCCTCTGAAGGTTCAGTTGCAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATACGTGTACACCACCGGTTGAAAAAACTCGATAAGGATTCTACAAAAACTAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTATCATTCAATAATGTGATGCTGGAGGAAGTTCCGGGGTCCTCAATTTTGCAAGCCCTGACAACTCTTATTCAGAAACAAGGATTTTATTCACTTCCTCAGTATTATCTGAGGGCTGGTGCAGCCCTTTTGGATATTGTTCAGTCTAAACCTTCCAGTTTTCCTATATCTTCCCAGGAGTTGTTCAGTATCCTTGACGATGCTAGTGAAAAAACATGTTTTTGGGGGACAACAGTGTCAATGCAAAGATATGTTTTCGATGGAGAGGCTGGAAAAATTGGTCTTGAACCGAAAAACCTAGTTGCTACCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCGGACAAGGATGCTGAAGCACTGAGGTACCAGAAGCAATTGGTGGAGGAGGAAGAGGCTGCTCAGAAAAGACAAGCTAAGATTTTGGAGAGGAAACGCCAGAAAAAGCTCAGGCAAAAAGAACAGAAGGCTAGGGAACAAAGACACAAGGATGAGGCAGAAATTAAAGGGAATATTGGCTGTACTTTAAAGGCTTTATCAACAGCAGAAGCATCTTTGGATACATATTATTTTGTAGCTCATAATCCAGATACATTTGCAGATAACGCTCCTTCAGATGTACCTTTACAATGCCCTGACACTAGTGAAAGAATAGATGGGGATACTCAGTCAGGGTATGATTTTGGCACTGATCAGAATCTTGAGCGACAGTCAGCACGTGGACATAATCATCGGCGCTTAGTAGTTGCCAGACGGCTGGGGCTGCCAAAACCACAATGGGCTGTAGCCAATGAATTGCACACAAACCAGAGTTCTCCAACTTCAAAACTTGAAGTCTTTCAGAAATATAGAAACCGCCACGATCAAAGATTAGGTGCTATAGATACTGGTAGTAAAGTATGGAGTCGAAAGCCTAAACAAGAAATTGACATGTTGGTTTTAAAAACCATAGTAGAGAAAGAACCAGACCTAGTTAAGAATTATGAAGTTTTGATAGGGTCAATATCTGTTAATCTTGGCAATTGCAGCCAATCAGAGGGTTATACAGTGGCATCTCGAGAGGATTGCATGGTTGAGAATGTGGCCAAGCAGAATGGTTCTCAGGATAAGCCAATGAAACCTGATTTTGTCATGAGTGACAACAATAGGTCAACAGTTAAGCTTTGGAGGCGCCGGCATGAAACTAAAGATCCATTTCCAGTTAAAAGCGGTGGAACAGAATCTGATGCAGTCTATGGAAATGGAGATTGTCAAAACTTATCAGGTCCAAGTTGTTTAAGGTCGTGTAGTATAGATGGTAGTGATATTGATGATGAAAACAATTTCTCCCATCTAGAGGGTAGAGTGGATCCGGGAAGCTTACGGTTATCGAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTTATCAAATCATGTGAAATTTGTTGTTTCCCCTGATTCTGAACCTACTGGATGTCAGGAGATACAGGATTTTGAAATAGGAGCATGTCAATCTTCTGATGTTGACAGATGCAAAATTCTTTCAAACTCAGAAAACAGGTTGCCTGTAACCTCCAGAATTACTAAATCCAAACCCAAAATGAAGCCTGGAAAGGGAACCAAGATAAAGTATGTTGCAAATCAAAAAATAGCTACCTAA 2049 0.4148 MSVAKLKVSGSPDIMKTEDRIDTIIRQAIGKEPFLAFPRAGDSPVQWIQLLHALDQQELPGWPLLSPLKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSTKTRDLLGAYWDKLSVEEAKEVVSFNNVMLEEVPGSSILQALTTLIQKQGFYSLPQYYLRAGAALLDIVQSKPSSFPISSQELFSILDDASEKTCFWGTTVSMQRYVFDGEAGKIGLEPKNLVATTSFLLEQKLVKAWLADKDAEALRYQKQLVEEEEAAQKRQAKILERKRQKKLRQKEQKAREQRHKDEAEIKGNIGCTLKALSTAEASLDTYYFVAHNPDTFADNAPSDVPLQCPDTSERIDGDTQSGYDFGTDQNLERQSARGHNHRRLVVARRLGLPKPQWAVANELHTNQSSPTSKLEVFQKYRNRHDQRLGAIDTGSKVWSRKPKQEIDMLVLKTIVEKEPDLVKNYEVLIGSISVNLGNCSQSEGYTVASREDCMVENVAKQNGSQDKPMKPDFVMSDNNRSTVKLWRRRHETKDPFPVKSGGTESDAVYGNGDCQNLSGPSCLRSCSIDGSDIDDENNFSHLEGRVDPGSLRLSSHAAKAFLAQRWKEAILSNHVKFVVSPDSEPTGCQEIQDFEIGACQSSDVDRCKILSNSENRLPVTSRITKSKPKMKPGKGTKIKYVANQKIAT 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1002g00018 682 Coils Coil 244 298 - -
Gabi1002g00018 682 SMART c2h2final6 73 95 IPR013087 -
Gabi1002g00018 682 MobiDBLite consensus disorder prediction 274 295 - -
Gabi1002g00018 682 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Gabi1002g00018 682 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 680 - -
Gabi1002g00018 682 ProSitePatterns Zinc finger C2H2 type domain signature. 75 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1002g00018 Gabi-Chr1002 85960 97598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1002g00018 19 680 C2H2 Transcription Factor Family AT4G25610 39.118 5.77e-134 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1002g00018 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1002g00018 - - gmx:100809067 966.452