Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1001g00003 ATGGAATCGTCTCCACAAAACTTGAATCCTACTCCATCAGAGTCAAGTTCCACAAACACAAAGGGTAATGGGTTCTACATTGAACGACCAAGTGACCTTGCCGTTGTGGTTTCACTATTATTCGAGCCAACTAGATTGAAAATATGCGAACTTGCATATTCAGCTATGGATGAGTTATTGAAAATAGCTGTTACTGGTAAACCTTTATGGCAACAAAGAAAAGGCCAGAAGTTCGATACCATGGATAAAATAGAATATCTGATAAAATATGGCGAGATTAAAGAAACAATGTATGAAATAACTAAGCTGGCTAAAGTTGGAGAGCCTCAAGTTTTGCCAAGCTACAACTCATTACATGTTGGATATGCTCCAACACCAAATACAACTCTAAGAGAGCCTTTAAAAATTGAAGGTTCAAGAGATATACGATATGTTAAAACGAATGCACTCAACATTGTCCAAATGTTTATGAATGTGGATCAATGGTCGACAACATTTTATAATATCGTTTCAAGAGCAGCATTCCTTGGAGTCATTGTAAATGGAGTCGAAGGAAGCTGTGATGGGAGATTGCAAGTGATGACTGCAGAATTTCAATTGCCTACACCTTTAGTAGCGACCCAAGAGTGTTGTTTTGCAAGGTATTGTAAGAAGTTGTCTCATAATAAGTGGGTGGTGGTTGATATTTCGTTGGAGAAGGCTTTTTCTTGCCCAACAAATACATTTCGAAGAAGACCATCAGGCTGTTTGATTAAAGAAATGCCAAATGGATACTCTAAGGTTATATGGGTGGAGCATGTGGTAACAGACTATAGGAATTTAAGCTCTCGGTTTCGGGACTTATTCTCCTCAGGTTTGGCCTTTGGGGCTACACGTTGGCTAAATGGTTTGTGGTATATGCTTTTACGGGAATATTCTGGTCGAGAACTCGTTTATGTTATTCAAGGCAATGATCCAAGAAACCGTGTTTCCATCATTCAAATGAATACTGGTGACGACCAGTTAGGTAAGTTTTTTGTTCAAGAGAGCTATGAAGACTCAATAGGCTTCTCTTACATAGTTTATTCTATGGTTGAGAAGTTAGCTTTATCAAGTCTTTTAAATGGAGGGGATCCAAACAACGTGGTTATCACACCTTCAGGGTTTACTATCCTTCCTGGTGGGATGAGTGACGGTGGCACTGGAAGTATTCTAACTATTGCATTCAATATGTTTCAAAGTATAACTAGTGTGCCAGTCTTCTTACCCCCTGAATCAGTTGCTGAGTTCAACAAAATCATGGCTTACACTGAAACTGGAATAAAGAATGCGCTTCTTTGA 1320 0.3886 MESSPQNLNPTPSESSSTNTKGNGFYIERPSDLAVVVSLLFEPTRLKICELAYSAMDELLKIAVTGKPLWQQRKGQKFDTMDKIEYLIKYGEIKETMYEITKLAKVGEPQVLPSYNSLHVGYAPTPNTTLREPLKIEGSRDIRYVKTNALNIVQMFMNVDQWSTTFYNIVSRAAFLGVIVNGVEGSCDGRLQVMTAEFQLPTPLVATQECCFARYCKKLSHNKWVVVDISLEKAFSCPTNTFRRRPSGCLIKEMPNGYSKVIWVEHVVTDYRNLSSRFRDLFSSGLAFGATRWLNGLWYMLLREYSGRELVYVIQGNDPRNRVSIIQMNTGDDQLGKFFVQESYEDSIGFSYIVYSMVEKLALSSLLNGGDPNNVVITPSGFTILPGGMSDGGTGSILTIAFNMFQSITSVPVFLPPESVAEFNKIMAYTETGIKNALL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1001g00003 439 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 298 438 IPR042160 -
Gabi1001g00003 439 Pfam START domain 134 297 IPR002913 GO:0008289
Gabi1001g00003 439 Gene3D - 143 273 IPR023393 -
Gabi1001g00003 439 CDD START_ArGLABRA2_like 50 294 - -
Gabi1001g00003 439 MobiDBLite consensus disorder prediction 1 23 - -
Gabi1001g00003 439 ProSiteProfiles START domain profile. 41 306 IPR002913 GO:0008289
Gabi1001g00003 439 SUPERFAMILY Bet v1-like 47 298 - -
Gabi1001g00003 439 SMART START_1 91 303 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1001g00003 Gabi-Chr1001 48298 56934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1001g00003 298 438 Homeobox Transcription Factor Family AT4G04890 34.375 7.95e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1001g00003 K09338 - qsu:111989412 258.455