Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1000g00003 ATGAGTTCATTCTCCATCACACGGAAAAAGACACCATTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCAGAAGATGAGACTGCTCGCTTGTATGCCGAATTTGTAGAGTCATTTCAAGGAGATACTACTCCTGGGTCAAAGACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTGAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTACGTACCATCTTTTATACCACCTCCGTTGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAGGAGGAGGAAAAGCCAAAGGAGAAGGAGAAAGGAAAGTCAAGGAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGACCGTGATCAGTGGCGTGATGGGCGTCCTGGAGAACATTCTACTTCCAGTCGCTTTGACGAGCTACCTGATGATTTTGATCCTAGTGGAAAACTTCCTGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGCGTAAAAATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAACTGATGGACAGGCTGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCTCCAGGGCATATGGCCATTAGGAATAAGGAGGGTAATACTGTGATTTTGTCTGGCCCATCAGGTCCGCCAGTAACATCTGTGCCTAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGACCATCTAAGGCATGTAATTGATACAATGGCTTTATATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCGAAGGAACATACCTACTATGTCTGGAGACTCTACTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACAGGCAGTGGAAGATGGATTCCTCCCCCATTACCAACAACAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGGCGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGTTTTTCGTTAGACAATGCTGATGCAGCTGGCGAGATAGTTGAAGTTTTGACTGAATCCTTGACACTTAGAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCCGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGAACCAAGTTCGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTACTGAAAGTCTTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACATTCCTTCGATCTGGGAACTCTGGGGTAACACCATTCCATTCCTTATGTGGTGATGTACCTGAGATTGAGCAGAAGATCACTTCCGAAGATACAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGAAGGAGTTAATGAATCTTCCTCTTGCTGAGCTCGAAAGACGGTGCCGACACAATGGATTATCACTTGTTGGTGGTAGAGAAACGATGGTTGCAAGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGAATTGAAATATTCCCACAACCATGCAAGTTCAGGGAAATATTTAGGTAGTCAGCAAGAAACAAGTGCCGAGCCTGAACCAGTGGGACTGTCTGGGTGGAACCACTATGGGGATGAAGATTTGCAGTCACAAGGCAAAGGGTCTGCACCTTTAGTGCCAGCCCTTCCCATTCCACAGGCTGAACTTAAAGCCTTCACCAAAAAGGAGAAGAATGAACCAGTTTTGCCAGCCTCTAAATGGGCTCGAGATGATGATGAGAGTGACGATGAGCAAAGAAGAAGTGGAAAAAATCTCGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGGTCTTATTAAAGCTGATGAATCAGAGTGTGCTGCTGATACAAGTTTTTTAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAAGAAATTGAGAAGAAAGTTGCAACACACCGGAAAAGGCTGCAAGTGGAGTATGGATTATCAGACTATGGTGAAGATGGTCAAGGCAATAGAAGAACATCTTCAGAGAGGAGGGATAGGCTCGATGTGTCAAGGAAACGGCACCGTAGCCGTAGTCGAAGCAGTAGTCCACAACCGAAGTCATCAGGCAAAGACAGAGATAGAGAACATGATTTAGAAAGGGAACGAGAGAGGCAAAGAGATAGAAGTTATGATTTGGATAGTGATAGAGGAAAGGACAGGCTCCGGGAAAAGAGTGGAAGCAGAGAAAGGGATGATCACGATAGGGAGAGGGGCAGGGACAGGGACAGGAGAAGACGAACCAAATAA 2916 0.4441 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDRDQWRDGRPGEHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRTDGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRNKEGNTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPTTKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSLCGDVPEIEQKITSEDTVVGGKTNQDAALAMGRGAATKELMNLPLAELERRCRHNGLSLVGGRETMVARLLSLEEAEKQRGYELDDELKYSHNHASSGKYLGSQQETSAEPEPVGLSGWNHYGDEDLQSQGKGSAPLVPALPIPQAELKAFTKKEKNEPVLPASKWARDDDESDDEQRRSGKNLGLSYSSSGSENVGDGLIKADESECAADTSFLAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVATHRKRLQVEYGLSDYGEDGQGNRRTSSERRDRLDVSRKRHRSRSRSSSPQPKSSGKDRDREHDLERERERQRDRSYDLDSDRGKDRLREKSGSRERDDHDRERGRDRDRRRRTK 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1000g00003 971 Gene3D - 819 870 - -
Gabi1000g00003 971 SUPERFAMILY ENTH/VHS domain 447 586 IPR008942 -
Gabi1000g00003 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Gabi1000g00003 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 857 971 - -
Gabi1000g00003 971 Pfam cwf21 domain 820 864 IPR013170 -
Gabi1000g00003 971 Coils Coil 820 840 - -
Gabi1000g00003 971 SMART cwf21_2 819 868 IPR013170 -
Gabi1000g00003 971 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Gabi1000g00003 971 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 11 35 - -
Gabi1000g00003 971 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Gabi1000g00003 971 Pfam CID domain 450 578 IPR006569 -
Gabi1000g00003 971 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Gabi1000g00003 971 CDD RRM_SR140 185 268 IPR035009 -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 692 736 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 43 57 - -
Gabi1000g00003 971 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 749 796 - -
Gabi1000g00003 971 Coils Coil 448 468 - -
Gabi1000g00003 971 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Gabi1000g00003 971 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 878 892 - -
Gabi1000g00003 971 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Gabi1000g00003 971 Coils Coil 17 37 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 61 80 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 909 964 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 417 442 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 410 442 - -
Gabi1000g00003 971 Gene3D - 443 590 IPR008942 -
Gabi1000g00003 971 SMART rrm1_1 187 263 IPR000504 GO:0003723
Gabi1000g00003 971 Gene3D - 97 269 IPR012677 -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 779 793 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 693 708 - -
Gabi1000g00003 971 CDD cwf21_RRC1-like 819 868 IPR047491 -
Gabi1000g00003 971 PANTHER RNA PROCESSING PROTEIN LD23810P 1 904 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 1 183 - -
Gabi1000g00003 971 SMART 558neu5 450 585 IPR006569 -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 749 778 - -
Gabi1000g00003 971 MobiDBLite consensus disorder prediction 99 169 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1000g00003 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.84e-06 49.3