Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_46g00004 ATGAACAACGGCAACACCAAGAAGCGAGACCCTCCCCCTTCATCTTCAGTCCAACAACCACAAAAGCGTTTCCAAGTCCAACCAACAATGGAAGAAGAAGATATGGACGAGGACGTGTTCTTTGAGGAGACCCTACTCCGAGAAGAAGAAGAAGCTCTGATCCTCCGCGACGAGGAAGACCGTCGTCAAGCCCTCGCTTCCCGTCTCTACAAATGGAAGCGACCTTCCCTCTCTCCTTCCTATCTCTCCCAATCTAGCAACATCATTTTCCAGCAATTGGAGATCGATTACGTGATCGGCGACAGCAATAGAGAGTTGCTGCCGATTTCGTTAGGCCCTGCCGCCATACTCAGAATCTTCGGCGTCACAAGGGAAGGACATAGTGTTTGCTGTCATGTTCACGGCTTCGAGCCATATTTCTACATCAACTGCCCTCCAGGAATGGGCCCCGACGATATATCCCGTTTACATCAAATTCTTGAGGTAAGGACGAGGGAAGTGAATAGGAACAGTAAGGTTCCCAAATTTGTCCTACGGATTGAGTTGGTGCAGAAGAGGAGCATTATGTATTACCAGCAACAGCAGTCTCACCCTTTCCTCAAGATCGTAGTCGCATTGCCAACGATGGTTGCTGGTTGTCGAGGCATCCTTGAGAGTGGCATACAAATTGATGGCCTTGGTACAAAAAGCTTCATGACATACGAAAGCAATGTTCTGTTTGCTCTTCGTTTCATGATTGATTGCAACATTGTTGGGGGCAATTGGATAGAAGTTCCTGCTGGGAAATATAAGAAGAGAACAAAGACTATGTCATATTGCCAACTTGAATTTGATTGTCTGTATTCCGAATTAATTAGCCATGATCCAGAGGGGGAATTCTCTAAAATGGCTCCATTCCGCATATTGAGTTTTGACATCGAGTGTGCTGGTCGCAAAGGGCTTTTTCCTGAGCCTAGCCATGACCCTGTTATTCAGGTGGCTAATCTAGTCACTCTACAAGGAGAGGACCATCCATTTGTGCGCAACATCATGACCCTTAAGTCATGCTCTCCGATTGTTGGTGTTGACGTGATGTCATTTGATACAGAAAGAGAACTTCTGCTAGCTTGGAGGGATTTTGTATGCAAAGTGGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGATTTGCCGTATCTCATTGAGAGAGCTGAGGCCTTAAAAATAGCAGAATTTCCAATCCTGGGCCGCATCAGGAGCAGCAGGGTTCGTGTCAAGGATGCAACTTTTTCATCAAGACAGTATGGAACACGGGAGAGTAAAGAAGTTACAGTTGAAGGGAGAGTTCAATTTGATTTGCTTCAGGTAATGCAAAGGGATTATAAGCTAAGTTCGTATTCACTGAACTCTGTTTCGGCACACTTTCTTGGGGAGCAGAAAGAGGATGTGCACCACTCAATAATATCTGATCTTCAGAATGGGAACTCCGAAACTAGGAGGCGTCTTGCTGTCTATTGCTTGAAGGATGCTTATCTTCCACAACGGCTTTTGGACAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGGGTCACAGGTGTCCCCATCTCTTTTCTGCTTTCAAGAGGGCAAAGCATTAAGGTTCTTTCCCAGCTTCTTAGGAAAGCAAAACAGAAGAACCTTGTTATTCCTAGTGTCAGAAAGCAGGGATCTGGAGAAGGAACATTTGAGGGTGCAACCGTTTTGGAGGCCAAGACAGGGTTCTATGAGAAGCCCATTGCGACATTGGATTTTGCATCTTTGTATCCATCCATCATGATGGCATATAATCTTTGTTACTGCACTCTGGTAACGCCTGAAGATGTCCGCAAACTCAACCTGCCACCAGAATGTGTTAACAAAACTCCATCTGGTGAAACATTTGTCAAATCAAATCTACAGAAGGGTATACTTCCAGAAATTCTTGAAGAACTGTTGACTGCTCGTAAAAGAGCAAAAGCCGATCTGAAGGAAGCAAAGGATCCCATGGTGAAGGCTGTGCTGGATGGTCGCCAGCTGGCCCTAAAGATAAGTGCAAACTCTGTATATGGATTTACAGGAGCTACTGTTGGCCAATTACCATGTATAGAGATATCTTCTAGTGTGACAAGCTATGGTCGACAGATGATTGAGCACACAAAGAAGCTTGTGGAAGAGAGATTCACTACACTAGGTGGCTATGAACACAATGCTGAGATCGTGTATGGGGACACTGATTCGGTTATGGTACAATTCGGTGTCCCTACTGTAGAAGCAGCAATGAGCTTGGGGAGAGAAGCTGCTGAATACATTAGTGGCACTTTCATTAAGCCCATCAAACTAGAGTTTGAGAAGGTTTATTATCCATATCTATTGATTAGCAAGAAGAGATATGCTGGACTGTTTTGGACAAATCCAGATAAGTTTGACAAAATGGACACTAAAGGCATTGAAACAGTTCGAAGGGACAATTGCCTACTGGTGAAAAACCTGGTAACTGAATGCCTTCACAAAATATTAATTGACCGAGACATTCCTGGTGCTGTTCAGTATGTCAAGAATACCATTTCAGATCTTCTTATGAACCGCATGGATTTGTCACTTTTGGTTATAACTAAGGGTCTGACGAAAACAGGAGATGATTATGCAGTAAAGGTAGCGCATGTTGAACTTGCTGAACGCATGCGCAAGCGAGATGCTGCTACTGCACCCAACGTTGGGGATCGTGTACCATATGTCATTATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAAAGGTCAGAGGATCCTATCTATGTGCTAGAGAATAACATACCAATAGACTCTCAATACTACCTTGAAAATCAAATTAGCAAGCCACTTTTGAGAATATTTGAGCCCATTCTAAAGAATGCAAGCAAGGAACTTCTTCATGGTAGTCACACAAGAGCTGTTTCCATTTCAACTCCTTCAAACAGTGGCATAATGAAGTTTGCTAAGAAGCAGCTCAGTTGTCTTGGCTGCAAAGCTGTAATTAGTAATGCAGAGCAAACTCTCTGCTCACATTGTAAAGGAAGAGAAGCTGAACTGTACTGCAAAACAGTAGCTAATGTGTCCGAGTTAGAGGTGCTCTTTGGGAGGCTGTGGACACAGTGCCAGGAGTGCCAAGGCTCTCTTCACCAAGATGTGCTCTGTACAAGTCGGGATTGCCCAATATTTTATCGGAGGAAGAAGGCACAAAAGGACATGGCTGAAGCTAAGTTGCAGTTGGATCGATGGCAATTTTGA 3273 0.4397 MNNGNTKKRDPPPSSSVQQPQKRFQVQPTMEEEDMDEDVFFEETLLREEEEALILRDEEDRRQALASRLYKWKRPSLSPSYLSQSSNIIFQQLEIDYVIGDSNRELLPISLGPAAILRIFGVTREGHSVCCHVHGFEPYFYINCPPGMGPDDISRLHQILEVRTREVNRNSKVPKFVLRIELVQKRSIMYYQQQQSHPFLKIVVALPTMVAGCRGILESGIQIDGLGTKSFMTYESNVLFALRFMIDCNIVGGNWIEVPAGKYKKRTKTMSYCQLEFDCLYSELISHDPEGEFSKMAPFRILSFDIECAGRKGLFPEPSHDPVIQVANLVTLQGEDHPFVRNIMTLKSCSPIVGVDVMSFDTERELLLAWRDFVCKVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRSSRVRVKDATFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPSVRKQGSGEGTFEGATVLEAKTGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPMVKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEERFTTLGGYEHNAEIVYGDTDSVMVQFGVPTVEAAMSLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPDKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYAVKVAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDSQYYLENQISKPLLRIFEPILKNASKELLHGSHTRAVSISTPSNSGIMKFAKKQLSCLGCKAVISNAEQTLCSHCKGREAELYCKTVANVSELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWQF* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_46g00004 1090 Gene3D - 818 973 IPR042087 -
EuplCTG_46g00004 1090 CDD DNA_polB_delta_exo 294 522 - -
EuplCTG_46g00004 1090 SMART polmehr3 297 756 IPR006172 GO:0000166|GO:0003676|GO:0003887
EuplCTG_46g00004 1090 FunFam DNA polymerase 645 697 - -
EuplCTG_46g00004 1090 Gene3D - 298 516 IPR036397 GO:0003676
EuplCTG_46g00004 1090 FunFam DNA polymerase 94 269 - -
EuplCTG_46g00004 1090 Pfam DNA polymerase family B, exonuclease domain 123 466 IPR006133 -
EuplCTG_46g00004 1090 ProSitePatterns DNA polymerase family B signature. 744 752 IPR017964 GO:0000166|GO:0003676
EuplCTG_46g00004 1090 PRINTS DNA-directed DNA-polymerase family B signature 681 693 IPR006172 GO:0000166|GO:0003676|GO:0003887
EuplCTG_46g00004 1090 PRINTS DNA-directed DNA-polymerase family B signature 742 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
EuplCTG_46g00004 1090 PRINTS DNA-directed DNA-polymerase family B signature 589 602 IPR006172 GO:0000166|GO:0003676|GO:0003887
EuplCTG_46g00004 1090 CDD POLBc_delta 571 964 - -
EuplCTG_46g00004 1090 MobiDBLite consensus disorder prediction 1 34 - -
EuplCTG_46g00004 1090 Pfam DNA polymerase family B 530 963 IPR006134 GO:0000166|GO:0003677
EuplCTG_46g00004 1090 FunFam DNA polymerase 818 974 - -
EuplCTG_46g00004 1090 Pfam C4-type zinc-finger of DNA polymerase delta 1000 1071 IPR025687 -
EuplCTG_46g00004 1090 NCBIfam DNA polymerase (pol2) 243 961 - -
EuplCTG_46g00004 1090 SUPERFAMILY Ribonuclease H-like 113 536 IPR012337 -
EuplCTG_46g00004 1090 MobiDBLite consensus disorder prediction 1 26 - -
EuplCTG_46g00004 1090 FunFam DNA polymerase 337 571 - -
EuplCTG_46g00004 1090 Gene3D Palm domain of DNA polymerase 572 801 IPR023211 -
EuplCTG_46g00004 1090 SUPERFAMILY DNA/RNA polymerases 555 965 IPR043502 -
EuplCTG_46g00004 1090 Gene3D Helix hairpin bin 645 697 - -
EuplCTG_46g00004 1090 Gene3D DNA Polymerase, chain B, domain 1 93 270 - -
EuplCTG_46g00004 1090 Coils Coil 1071 1090 - -
EuplCTG_46g00004 1090 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 73 1056 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_46g00004 35 1090 Core DNA Replication Machinery Family AT5G63960 81.581 0.0 1830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_46g00004 K02327 - mof:131150783 1913.27