Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_46g00003 ATGGGAGTTTTCGGGCCTTTGAGCTTCTGGGTATCCCTGTATTTCACATTTACTATCTATTTCAGAGGTTTAATGGCCGAGGACGAGAGAAAAATCCCTCCCCTGAACACCATGAAAAATGATGATATTGGTGGTATGGCTACTTTAAACCCAACTCCTCCTCCTCCGCTGCTAGCACCACCACCTCCTCTCCCTATTGCCGCTACCAAATCCAACATAGCTCCGTTTAGACCGAGCATCGCTGTGATCGTCGGGGTTCTCACGACCATGTTCTCCATTACATTTCTTCTCCTTCTGTACGCTAAACACTGTAAGAGGAGCAACGGCGCTGGTGGGTACTCTGGGAACCCTAATTCTGGGGCACCCACTTCGTCTGGAGCGAGGAAGAACTCGGGGGTCGATCGCTCGGTGATTGAGTCGCTACCAATTTTCAGATTCGGGTCTCTCAGAGGTCAAAAGGAGGGGCTTGAGTGCGCTGTTTGCTTGACCAGGTTCGAGCCCACGGAGGTGTTGAGGTTGCTGCCCAAATGCAAGCACGGGTTCCATGTCGAGTGTGTCGATACCTGGCTCGACGCCCACTCAACCTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAAGATGTTCTCCTGGTGGAAGAAATAAAACTCGGAGAAGATTACCGTCGTAGTGGAAGCGAAGTCGTTGCCGCTGAGTTCGAAACCCGAAATCGGGACGAGTTTTCAAACCCGGGGGAGACTGGGTTTGGAAGAGTTTCAGGTCGTCACTCGTCGGCCGGGGAGAAAACGAGTCATTTTCTGCACATCCTGGTGCAACGACCCGGCGACTCGGACCCAGACGACTCGTCATCATCGGTTTCCAGAAGATCACTCGATAGCGCGAGCTTGAGAAGGAAAAAGGAATCTGTAGCTGTGGGATGCTTTGACCGCGGGGGACGTAAAGACGGACTTCTGTTATCAGAAGCAGCGACGGACGCTGATAGGGAAAGCTTCGTACGGAGGTTTGAGCACCGGATCATTGTGTCCGGGGCAGGTGGGTTCCAACGCCGGTGGAGCGATCTACAGCCATCGGATATGTTGTTTATACAATCGGAGATGATAATGACAGAAAGCGGTCGGTATTCATCGTCGGGCTCTCGACCGTGGATTTCACTGAAGCAGATGAGAGAGGAGAGAGAAGAGGTTGGGGTGAAAGTGGGAGAGGAGGAAGAGAAGATGATTGATGGGAATGGCAGAAACGTAATAAATTCAAGAAGCGTGTCGGAAATCACGGGGTTAAGCAGGTTCTCGAACAGAACAAGTGGAACCTACCAAGCCCGGGTCGGTCGAGAAGAACGAGAAGCGAGGGGGGCTGTAAAGAGGTTGTTGGGGTGGGCATCCTTGCAGCGAAGTGTACGGCTTAAACAAACAAACAGAGGTAGTCTAGTTGTGTAG 1431 0.5241 MGVFGPLSFWVSLYFTFTIYFRGLMAEDERKIPPLNTMKNDDIGGMATLNPTPPPPLLAPPPPLPIAATKSNIAPFRPSIAVIVGVLTTMFSITFLLLLYAKHCKRSNGAGGYSGNPNSGAPTSSGARKNSGVDRSVIESLPIFRFGSLRGQKEGLECAVCLTRFEPTEVLRLLPKCKHGFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEEIKLGEDYRRSGSEVVAAEFETRNRDEFSNPGETGFGRVSGRHSSAGEKTSHFLHILVQRPGDSDPDDSSSSVSRRSLDSASLRRKKESVAVGCFDRGGRKDGLLLSEAATDADRESFVRRFEHRIIVSGAGGFQRRWSDLQPSDMLFIQSEMIMTESGRYSSSGSRPWISLKQMREEREEVGVKVGEEEEKMIDGNGRNVINSRSVSEITGLSRFSNRTSGTYQARVGREEREARGAVKRLLGWASLQRSVRLKQTNRGSLVV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_46g00003 476 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 68 455 - -
EuplCTG_46g00003 476 MobiDBLite consensus disorder prediction 111 131 - -
EuplCTG_46g00003 476 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
EuplCTG_46g00003 476 CDD RING-H2_EL5-like 157 200 - -
EuplCTG_46g00003 476 Pfam Ring finger domain 157 200 IPR001841 -
EuplCTG_46g00003 476 FunFam RING-H2 finger protein ATL43 133 207 - -
EuplCTG_46g00003 476 MobiDBLite consensus disorder prediction 111 132 - -
EuplCTG_46g00003 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
EuplCTG_46g00003 476 SMART ring_2 158 199 IPR001841 -
EuplCTG_46g00003 476 MobiDBLite consensus disorder prediction 238 258 - -
EuplCTG_46g00003 476 MobiDBLite consensus disorder prediction 276 290 - -
EuplCTG_46g00003 476 MobiDBLite consensus disorder prediction 271 292 - -
EuplCTG_46g00003 476 SUPERFAMILY RING/U-box 137 205 - -
EuplCTG_46g00003 476 Coils Coil 384 404 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_46g00003 78 458 C3H Transcription Factor Family AT5G05810 47.264 3.99e-96 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_46g00003 K19041 - nnu:104603147 477.248