Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_34g00013 ATGGCAAAACCTATACCAAGAATTGGTTCACGTAGGAATGGACGTATTGGTTCACGTAAGAATGGACGTAGAATACCAAAAGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATTGTAACGGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAGGGGCACAAGAAGAGGGACGCCATTTGCTGCTCAAACCGCCGCAGGAAATGCTATTCGTACAGTAGTAGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTTGGAAGAGATGCAGCATTACGAGCCATTCGTAGAAGTGGTATACTATTAAGTTTCGTACGGGACGTAACCCCTATGCCACATAATGGATGTAGACCTCCTAAAAAAAGACGTGTGTAG 417 0.4508 MAKPIPRIGSRRNGRIGSRKNGRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_34g00013 138 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
EuplCTG_34g00013 138 NCBIfam 30S ribosomal protein S11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
EuplCTG_34g00013 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 8 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
EuplCTG_34g00013 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
EuplCTG_34g00013 138 Gene3D Ribosomal protein S11 10 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
EuplCTG_34g00013 138 MobiDBLite consensus disorder prediction 1 23 - -
EuplCTG_34g00013 138 SUPERFAMILY Translational machinery components 24 138 - -
EuplCTG_34g00013 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
EuplCTG_34g00013 138 FunFam 30S ribosomal protein S11, chloroplastic 11 138 - -
EuplCTG_34g00013 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 25 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_34g00013 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.455 1.91e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_34g00013 K02948 - fve:10251554 236.498