Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_258g00013 ATGGCGGGAGTGAGCCTTTACGTGAGCTCCAAAGCAGAGCTAAAACGGAAGGAGAAGCAGAAGAAGAAGGCCAAGTCAGGAGGTTTCGAGTCTCTGGGACTAAGCTCTAATGTGTTCAGAGGGATCAAACGCAAGGGTTACAAAGTCCCCACCCCCATACAGAGGAAGACGATGCCACTCATCCTTTCCGGCGCTGACGTCGTGGCGATGGCGAGGACGGGCTCGGGTAAGACTGCGGCGTTCCTGCTGCCGATGCTGGAGCGCTTGAAGCAGCACGTCCTTCAGGGGAGCGTTAGGGCTCTCATTCTCTCCCCCACAAGAGACTTGGCTCTTCAGACTTTGAAGTTCACCAAGGAGCTGGGTCGATTCACAGATCTTCGTATAAGTTTATTGGTTGGTGGTGATAGAATGGAAAGCCAGTTTGAAGAGTTAGCACAGAATCCTGATATCATAATTGCAACTCCTGGTCGGCTTATGCATCATTTGTCTGAGGTCGAAGACATGTCCTTGCGTAGTGTGGAATATGTGGTTTTTGACGAAGCTGATTGTCTCTTTGGCATGGGCTTTGCCGAGCAATTGCACAAAATCCTCGCACAGCTGAGCGAGACCCGTCAGACCTTGCTCTTCAGCGCGACCTTACCGAGTGCCCTTGCTGAGTTTGCCAAGGCAGGACTGCGAGACCCGCAACTCGTGCGGCTTGATTTGGAGACTAGGATTAGTCCCGACCTAAAGCTTACCTTCTTCACCTTACGCCAGGAAGAGAAACATGCTGCATTGTTGTATCTGATTAGGGAGCAAATTAGTTCAGATCAGCAGACGTTGATATTTGTTTCCACAAAGCACCACGTGGAGTTCCTCAATATTCTCTTTAAAGAAGAGGGTATCGAGCCTTCTGTATGTTACGGTGACATGGACCAAGATGCTCGCAAGATTCATATCTCGAAATTTAGAGCAAGAAAGACGATGTTGCTTATTGTGACAGATGTTGCCGCTAGGGGTATTGATATACCATTGCTTGATAATGTTGTAAACTGGGATTTCCCTCCAAAACCTAAAATTTTCGTTCATAGAGTGGGGCGAGCTGCTCGGGCAGGTCGGACTGGCACTGCATTTTCTTTTGTCACATCGGAGGATATGCCTTACCTTTTAGATCTTCATCTCTTTCTCTCTAAGCCAATTAGACCTGCTCCCACTGAGGAAGAGGTACTGCGAGACATGGATGGAGTATTATCAAGAATTGATAAGGCAGTTGCAAATGGAGAAACTGTCTATGGGCGTTTTCCGCAGACTGTTATAGATCTTGTTTCCGACAGAGTTCGGGAAATTATTGATAAGTGTACGGAACTGATTTCTTTGCAGAAGTCCTGTACAAATGCATTCCGCTTGTATTCGAAGACGAAGCCTTCACCTTCAAGGGAATCCATTAGAAGAGCAAAGGTCTTGCCCTGTGAAGGATTGCATCCAATTTTTAAGAATTTACTGGGAGGTAGTGAGCTAACAGCACTGGCCTTCTCTGAACGTTTGAAAGCTTTCAGACCAAAGCAGACCATTTTGGAAGCGGAAGGCGAAGCTGCTAAATCAAAACATTTTCAAGGTCCTTCTAGTCAATGGGTTGATGTGATGAAGAAGAAAAGAGCTATTCATGAAAACATAATCAATTTGGTACATCAGAAACAATCTAATGATCAGGCGGTGAAGGAAGTTGAATCAGAAGGCGCAATTTCTAAGGAAGAGGGAAAAAAAGAAGTTCGGGGTTCTAAAAGAAAGGCAAAGACCTTCAAGGATGAGGATTACTACATAAGTTCAATTCCTACAAATCAATTCTTTTGTTATATGCTCTGGTTTGGTTTCTCTTTACTATTTTGGAAGTATGGCTTGGTAATCTTGGTATCATTTCAGCATTTGGAGGCGGGACTCTCAATGAGAGCTAATGAGGGTTTTGGATCGAGCAGGTTGGAAGCTGCTGTTCTTGATCTAGTTGCAGATGATAGTGCTGGTTTGCAAAAACAAAAATCTGTTTATCATTGGGATAAGAGGAGTAAGAAGTACATCAAATTAAACAACGGTGAACGTGTGACAGCCAGTGGAAAGATCAAGACAGAGAGTGGCTCAAAAGTAAAAGCTACCAAGACTGGAATATACAAGAAGTGGAAAGAACGGTCACACAATAAGGTATCTCTCAAGGGAATGAATACTGAAGGCAATGCTGAAGAGCGCAGAGGCTTAGCAGGGGATTGTCAAATGCGAGGAGATAACAGAAAGTTCAAGGGGGGCAAGAAGCATAGATCAGTGCCCAATGCCCATGTGCCTTCAGAACTTAGAGATCCTGAGCAAGTTCGGAAGATTAGGCAGCAACAGTCAAACAGAATCTCTTACATCAAAAACAAATCTGCAAAGGGTAAAAAGTTTAAGAAAAATGGAAAAAGAGGAAAGTCAAAGTAG 2442 0.4472 MAGVSLYVSSKAELKRKEKQKKKAKSGGFESLGLSSNVFRGIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLLPMLERLKQHVLQGSVRALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDRMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLSETRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLTFFTLRQEEKHAALLYLIREQISSDQQTLIFVSTKHHVEFLNILFKEEGIEPSVCYGDMDQDARKIHISKFRARKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRPAPTEEEVLRDMDGVLSRIDKAVANGETVYGRFPQTVIDLVSDRVREIIDKCTELISLQKSCTNAFRLYSKTKPSPSRESIRRAKVLPCEGLHPIFKNLLGGSELTALAFSERLKAFRPKQTILEAEGEAAKSKHFQGPSSQWVDVMKKKRAIHENIINLVHQKQSNDQAVKEVESEGAISKEEGKKEVRGSKRKAKTFKDEDYYISSIPTNQFFCYMLWFGFSLLFWKYGLVILVSFQHLEAGLSMRANEGFGSSRLEAAVLDLVADDSAGLQKQKSVYHWDKRSKKYIKLNNGERVTASGKIKTESGSKVKATKTGIYKKWKERSHNKVSLKGMNTEGNAEERRGLAGDCQMRGDNRKFKGGKKHRSVPNAHVPSELRDPEQVRKIRQQQSNRISYIKNKSAKGKKFKKNGKRGKSK* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_258g00013 813 Pfam Helicase conserved C-terminal domain 255 365 IPR001650 -
EuplCTG_258g00013 813 SMART helicmild6 284 365 IPR001650 -
EuplCTG_258g00013 813 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
EuplCTG_258g00013 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 404 IPR001650 -
EuplCTG_258g00013 813 Pfam DBP10CT (NUC160) domain 658 719 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
EuplCTG_258g00013 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 383 IPR027417 -
EuplCTG_258g00013 813 Pfam DEAD/DEAH box helicase 51 218 IPR011545 GO:0003676|GO:0005524
EuplCTG_258g00013 813 MobiDBLite consensus disorder prediction 733 753 - -
EuplCTG_258g00013 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 231 IPR014001 -
EuplCTG_258g00013 813 SMART DBP10CT_2 658 720 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
EuplCTG_258g00013 813 CDD SF2_C_DEAD 243 374 - -
EuplCTG_258g00013 813 Gene3D - 246 471 IPR027417 -
EuplCTG_258g00013 813 MobiDBLite consensus disorder prediction 795 813 - -
EuplCTG_258g00013 813 SMART ultradead3 46 248 IPR014001 -
EuplCTG_258g00013 813 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 12 723 - -
EuplCTG_258g00013 813 MobiDBLite consensus disorder prediction 728 813 - -
EuplCTG_258g00013 813 CDD DEADc_DDX54 27 232 IPR033517 -
EuplCTG_258g00013 813 Gene3D - 6 234 IPR027417 -
EuplCTG_258g00013 813 MobiDBLite consensus disorder prediction 765 782 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_258g00013 29 378 Eukaryotic Initiation Factors Gene Family AT3G13920 32.670 1.09e-56 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_258g00013 K14808 - msin:131236645 1269.6