Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_258g00008 ATGAGCTTCTTGAGACCCTCCGCGCTGTATCGCTTTCTTTTGACTTTCCCTTCGCTACGATGGATGCCATGCCAGATTTGGGCGTCTCTCCGATGTCCCACTCTCGATGGGTTTATGAGCGTTGTTGTGTTGTTGTTGATATGGTCCATGTTTGCTGAGATTCGCTTCATACCGTCTTCGTCTATGTACCCAACTCTCCGTGTTGGGGATCGGATCATCGCCGAGAAGGTCTCATATTATATCAGAAGCCCTGCTGTAGAAGACATTGTTCTTTTCAGAGCACCTAAGAATTTACAGGATATTGGATACAAGAGAGAAGATGTTTTTATTAAAAGAATTGTGGCAAAGGCAGGTGACTTGGTCGAGGTTCATCATGGGTTGCTTTATATCAATGGGGTCGCCCAGGAGGAAGATTTCATAGCAGAACAGCCAACTTACAAATTGCGTGAAACTTTTGTGCCTCAAGGTCATGTTTATGTGTTGGGTGACAATCGTAACAACAGCTGTGACTCCCATGTTTGGGGACCTCTTCCTATTGAAAACATTGTGGGAAGATACGTCATGAGTTGTTCAAGGCCGCCTTAA 585 0.4513 MSFLRPSALYRFLLTFPSLRWMPCQIWASLRCPTLDGFMSVVVLLLIWSMFAEIRFIPSSSMYPTLRVGDRIIAEKVSYYIRSPAVEDIVLFRAPKNLQDIGYKREDVFIKRIVAKAGDLVEVHHGLLYINGVAQEEDFIAEQPTYKLRETFVPQGHVYVLGDNRNNSCDSHVWGPLPIENIVGRYVMSCSRPP* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_258g00008 194 NCBIfam signal peptidase I 39 188 IPR000223 GO:0006508|GO:0008236|GO:0016020
EuplCTG_258g00008 194 CDD S26_SPase_I 53 185 IPR019533 GO:0004252|GO:0006465
EuplCTG_258g00008 194 SUPERFAMILY LexA/Signal peptidase 50 188 IPR036286 -
EuplCTG_258g00008 194 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
EuplCTG_258g00008 194 ProSitePatterns Signal peptidases I signature 3. 158 171 IPR019758 GO:0004252|GO:0016020
EuplCTG_258g00008 194 Gene3D Umud Fragment, subunit A 59 192 - -
EuplCTG_258g00008 194 Pfam Signal peptidase, peptidase S26 38 188 IPR019533 GO:0004252|GO:0006465
EuplCTG_258g00008 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 153 172 IPR000223 GO:0006508|GO:0008236|GO:0016020
EuplCTG_258g00008 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 109 121 IPR000223 GO:0006508|GO:0008236|GO:0016020
EuplCTG_258g00008 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
EuplCTG_258g00008 194 PANTHER SIGNAL PEPTIDASE I 36 190 IPR000223 GO:0006508|GO:0008236|GO:0016020
EuplCTG_258g00008 194 FunFam Peptidase/ serine-type peptidase 59 190 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_258g00008 62 185 MADS-box Gene Family AT1G29960 30.400 1.63e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_258g00008 K03100 - ming:122072660 329.331