Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_243g00009 GTTGGCACACCTGGGCGCCTTCTGGATCATTTGTCAAATACAAAGGGTTTTAGCCTTCGTACGTTGAAATACTTGGTATTGGATGAGGCAGATAGGTTGCTAAATGATGACTTTGAGAAAGCAATTGATGACATCTTGAAGGCTATTCCACGGGAGCGTAAGACATATCTATTTTCAGCTACCATGACCAAAAAGGTGCGCAAGCTCCAGAGGGCATGTCTGAGGAATCCTGTGAAGATTGAGGCAGCGTCTAAATATTCCACTGTTGATACACTCAAGCAGCAGTATTGCTTCGTTCCTGCGAAGTACAAGGACTGCTACCTGGTATACATTCTGAGCGAGATGTCCGGAAGTACTTCTATGGTTTTCACTCGTACATGTGAGGCAACTCGGAATCTGGCCTTGCTTCTTCGAAACCTTGGATTAAGGGCCATCCCGATTAGTGGACAAATGAGCCAGGCGAAGAGACTTGGAGCCTTAAACAAGTTCAAGGCTGGAGAGTGTAACATTCTGATCTGCACAGATGTGGCGAGTAGAGGTCTTGATATTCCTTCTGTAGATATGGTCATCAATTATGACATCCCTTCCAATTCTAAGGATTATATTCATCGAGTGGGTAGAACTGCTCGTGCAGGTCGCTCTGGGGTTGCGATCTCTTTAGTAAATCAATACGAGTTGGAGTGGTTTATTCAGATAGAGAAGCTTATCGGCAAAAAGCTTCCTGAATTTGTTGCTCAAGAAGAGGAAGTTCTGCTACTTTTGGAGCGTGTCACAGAGTCCCAAAGAATTTCTCGCACGAAAATGAAAGAGAGTGGGGGCAGAAGGAAAAGAAGAGGGGAAGGAGATGATGGTGAGGAAGAAGTTGACAGGTATTTAAGTCACAAGAATGGAAAGTCAGCCAAAAAGTCAAAGAAGCGATGA 921 0.4452 VGTPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNDDFEKAIDDILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYCFVPAKYKDCYLVYILSEMSGSTSMVFTRTCEATRNLALLLRNLGLRAIPISGQMSQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGKKLPEFVAQEEEVLLLLERVTESQRISRTKMKESGGRRKRRGEGDDGEEEVDRYLSHKNGKSAKKSKKR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_243g00009 306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 233 IPR027417 -
EuplCTG_243g00009 306 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 272 - -
EuplCTG_243g00009 306 SMART helicmild6 131 212 IPR001650 -
EuplCTG_243g00009 306 Gene3D - 1 88 IPR027417 -
EuplCTG_243g00009 306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 107 251 IPR001650 -
EuplCTG_243g00009 306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 80 IPR014001 -
EuplCTG_243g00009 306 MobiDBLite consensus disorder prediction 263 296 - -
EuplCTG_243g00009 306 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 26 34 IPR000629 -
EuplCTG_243g00009 306 MobiDBLite consensus disorder prediction 263 306 - -
EuplCTG_243g00009 306 Pfam Helicase conserved C-terminal domain 106 212 IPR001650 -
EuplCTG_243g00009 306 CDD SF2_C_DEAD 92 221 - -
EuplCTG_243g00009 306 Gene3D - 89 257 IPR027417 -
EuplCTG_243g00009 306 Pfam DEAD/DEAH box helicase 1 69 IPR011545 GO:0003676|GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_243g00009 1 242 Eukaryotic Initiation Factors Gene Family AT5G11170 32.806 1.49e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_243g00009 K14777 - psom:113300092 498.819