Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
EuplCTG_243g00004 ATGACTGGAAAAGATTTGATTGGGCTCGCACAAACCGGTTCTAGTAACACCGGAGCTTTCGCTCTTCCCATTCTCCAAGCCCACTTAGAGTCTCCACAGGCATTCTTTGCTTGCGTGCTCTCCCCAACACGGGAGCTTGCAATTCAGATTGCCGAACAGTTTGAAGCTTTGGGGTCTGGCATAGGTGTAAAGTGTGCAGTGGTTGTTGGAGGGGTAGACATGATGCAACAGACAATTGCTCTTGCAAAGAGGCCACATATTATTGTTGGCACACCTGGGCGCCTTCTGGATCATCTGTCAAATACAAAGGGTTTTAGCCTTCGTACGTTGAAATACTTGGTATTGGATGAGGCAGATAGGTTGCTAAATGATGACTTTGAGAAAGCAATTGATGACATCTTGAAGGCTATTCCACGGGAGCGTAAGACATATCTATTTTCAGCTACCATGACCAAAAAGGTGCGCAAGCTCCAGAGGGCATGTCTGAGGAATCCTGTGAAGGACTGCTACCTGGTATACATTCTGAGCGAGATGTCTGGAAGTACTTCTATGGTTTTCACTCGTACATGTGAGGCAACTCGGAATCTGGCCTTGCTTCTTCGAAACCTTGGATTAAGGGCCATCCCGATTAGTGGACAAATGAGCCAGGCGAAGAGACTTGGAGCCTTAAACAAGTTCAAGGCTGGAGAGTGTAACATTCTGATCTGCACAGATGTGGCGAGTAGAGGTCTTGATATTCCTTCTGTAGATATGGTCATCAATTATGACATCCCTTCCAATTCTAAGGATTATATTCATCGAGTGGGTAGAACTGCTCGTGCAGGACGCTCTGGGGTTGCGATCTCTTTAGTAAATCAATACGAGTTGGAGTGGTTTATTCAGATAGAGAAGCTTATCGGCAAAAAGCTTCCTGAATTTGTTGCTCAAGAAGAGGAAGTTCTGCTACTTTTGGAGCGTGTCACAGAGTCCCAAAGAATTTCTCGCACGAAAATGAAAGAGAGTGGGGGCAGAAGGAAAAGAAGAGGGGAAGGAGATGATGGTGAGGAAGAAGTTGACAGGTATTTAAGTCACAAGAATGGAAAGTCAGCCAAAAAGTCAAAGAAGCGATGA 1110 0.455 MTGKDLIGLAQTGSSNTGAFALPILQAHLESPQAFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVVVGGVDMMQQTIALAKRPHIIVGTPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNDDFEKAIDDILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKDCYLVYILSEMSGSTSMVFTRTCEATRNLALLLRNLGLRAIPISGQMSQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGKKLPEFVAQEEEVLLLLERVTESQRISRTKMKESGGRRKRRGEGDDGEEEVDRYLSHKNGKSAKKSKKR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
EuplCTG_243g00004 369 MobiDBLite consensus disorder prediction 326 369 - -
EuplCTG_243g00004 369 Pfam DEAD/DEAH box helicase 2 157 IPR011545 GO:0003676|GO:0005524
EuplCTG_243g00004 369 MobiDBLite consensus disorder prediction 326 359 - -
EuplCTG_243g00004 369 SMART ultradead3 1 186 IPR014001 -
EuplCTG_243g00004 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 296 IPR027417 -
EuplCTG_243g00004 369 Gene3D - 1 164 IPR027417 -
EuplCTG_243g00004 369 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 167 - -
EuplCTG_243g00004 369 Pfam Helicase conserved C-terminal domain 170 275 IPR001650 -
EuplCTG_243g00004 369 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 114 122 IPR000629 -
EuplCTG_243g00004 369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 168 IPR014001 -
EuplCTG_243g00004 369 Gene3D - 165 325 IPR027417 -
EuplCTG_243g00004 369 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 170 314 IPR001650 -
EuplCTG_243g00004 369 CDD SF2_C_DEAD 167 284 - -
EuplCTG_243g00004 369 SMART helicmild6 194 275 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
EuplCTG_243g00004 1 306 Eukaryotic Initiation Factors Gene Family AT3G19760 29.518 1.05e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
EuplCTG_243g00004 K14777 - psom:113300092 585.874