Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01344 ATGGAGGACCAAATTCTGCCAAATTCTTCGACCGAAGCCTTATTAACAAAACCCTACCTTCCTCTCTTCAACAAAACCTTCTATTTTCTAGTTTTTCCAGAAGCTGAAGCCATGGATTCTCTGCCACCAAACTCTCCTCCATCTTTCGAAACCCTACCCTCTTCAGCTCAAAATCCTTACTTGTCTTCAGAACAAACCCTAGTTCCTCCTCCACAGAATCCATCTTCTATGTTTCAAACCCTAGCCTCGTATGATCAAAATCCTCTTCCTCCTCCTCCTCCTCCTCCAGAAGCCCTAGCTTCGGACGATCAAGACCCACCATTGCCTCCAGAAACCCTAGCTCCTGAAGTTCAAAACCCACCGCCGCCTCCTGAAACCTTTACTTCTTATGAAACCCCAACCCTAAATCCGCCCTCTTCGGTCGAAAACCCCGAAACCCTATCTTCGGATCTCACCGCTCAAGAAAACATTGATCAGATACAGACCATATCGAAGCCCTTGGTGTCGGAAAATGGAGTAGGCGGAACCCACAGCGGCACCGACAAGGACTTTTCAGGCGGTGAAGAAGAAACAAGCAGCAGGCGACGGCGCCGGAGTAGGTGGGACCCACCGTCCGAATCCGACAACCAAAATGGCGATTCCGGTACTCGGAAGAGGAAATCCCGATGGGCCGACGACGAACCGAAGATGGCTATTCAACTGCCAGATTTCATGAAGGAATTTACAGGTGCTATGGACCCTGAACTTCAATCTCTTAACATTAGGCTTCTCGAGATTAGTAGGATATTATCGTCCGGTCTACCGTTAGATGATCGCCCTGAAGGTGCCCGTTCGCCTTCTCCTGAACCCATTTACGATAACATGGGTATTCGTATTAATACCCGAGAATATCGCGCTCGCGAAAGACTAAATAAGGAGAGATTAGATATCATCACTCAGCTTGTGAAACGGAATCCCAATTTTAAACCCCCGGCGGATTACCGCCCTCCCAAGCTTCAGAAGAAGCTTTACATTCCCATGAAAGAATACCCAGGTTACAATTTTATTGGGCTTATTATTGGGCCGAGGGGAAACACACAGAAGAGAATGGAGAAGGAGACGGGGGCGAAGATTGTCATTCGGGGTAAGGGTTCAATTAAAGAAGGCAGGTTGCAACAGAAGCGTGACTTGAAGCCGGATCCTTCGGAGAATGAGGACTTACATGTTTTGGTGGAAGCTGAGACGCAGGATGCACTTGATGCTGCTGCAGGGATGGTTGAGAAGCTTTTACAGCCTGTTGATGAAGGGCTCAATGAGCATAAGCGGCAACAGCTTAGGGAACTCGCTGCTTTGAATGGGACTATAAGAGATGATGAGTTTTGCAGGTTGTGTGGTGAGCCGGGTCACCGGCAGTATGCTTGTCCCGCTCGTACTTCAACTTTTAAGAGCGATGTTCTTTGTAAAATATGTGGTGATGGAGGGCACCCAACTATTGACTGTCCCATGAAGGGAACAACAGGAAAAAAAATGGACGATGAATATCAGAACTTCTTGGCTGAATTAGGAGGGACAGGCCCTGAATCGCTGACTAGACAAAGCCCTGCACTGCCGATTCTTGGGTCGAGCAATTCTGGAAGCAATCCCCCTTGGGCCAGTGGTAACAATGCTGGAGGTATTGGGAGCACATCACAAGCAGGGTTGACGGCTAATGGAGCTAAGACAGGAAAGGAATATGATGATACAAATCTGTACATTGGGTATTTGCCGCCTAATCTTGATGACGATGGCCTGATCCAATTGTTTTCACCTTACGGTGATATTGTGATGGCCAAGGTTATTAAGGATCGGGTGACTGGATTGAGCAAAGGTTATGGCTTTGTGAAGTATTCCGATGTTGCTCAGGCCAATCAAGCTATAGCTAGCATGAATGGTTACCGTCTAGAGGGGAGAGTAATAGCTGTAAGAGTTGCAGGTAAACCGCCTCAGCCTGCTGTACCTCCTGGGCCTCCGGCTCCGACAATGCCCACTTACCCTGGTTCAGGTCAAGCTGTTGGTGGATACCCTTCTCAGCATTTTACACCAGGTGGTCCTCTTGGTAATGTGCCACCTGGTGGCTACATGGGTGCCCCAGTTCCATGGGGACCACCAGTACCTCCTTATGCTTCTTATGCCCCACCCCCTCCCGGTTCAAGTATGTACGCTCCTGTGCAAGGTCAGTCTATGCCCTCTTATGGTGTACAGTATCCAATGTCACATCAGACTATTCCCCCCGGTGCCCCATCTTCAAGCGTGCCCTCTAGTGAAGCGCAGCAGAGTTTCCCCCCAGGAGTGCAATCTCAAAATAATACATCTGGACCATCATCTTTACCTAACAATACCTATGGAAATTCACTGCCTGGGATGCCACCAAATGTTCAACCCAGTTATCCCCCATCTTCATTAGGTTACCCATCTTATTATGGTGTAGCTCCTCCTCCTGTATCTCATTCGATGGACCATTCACAGGGCATGGGAACTGTGCCTTGGGCCTCGAATCAGCCAGCCCCTCCTCCCGTTTCATCTGCAGAACAAACAACTTATGGAGGTGACTCCGAGTATGAGAAGTTCATGGCGGAGATGAAATGA 2604 0.4877 MEDQILPNSSTEALLTKPYLPLFNKTFYFLVFPEAEAMDSLPPNSPPSFETLPSSAQNPYLSSEQTLVPPPQNPSSMFQTLASYDQNPLPPPPPPPEALASDDQDPPLPPETLAPEVQNPPPPPETFTSYETPTLNPPSSVENPETLSSDLTAQENIDQIQTISKPLVSENGVGGTHSGTDKDFSGGEEETSSRRRRRSRWDPPSESDNQNGDSGTRKRKSRWADDEPKMAIQLPDFMKEFTGAMDPELQSLNIRLLEISRILSSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNKERLDIITQLVKRNPNFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLQQKRDLKPDPSENEDLHVLVEAETQDALDAAAGMVEKLLQPVDEGLNEHKRQQLRELAALNGTIRDDEFCRLCGEPGHRQYACPARTSTFKSDVLCKICGDGGHPTIDCPMKGTTGKKMDDEYQNFLAELGGTGPESLTRQSPALPILGSSNSGSNPPWASGNNAGGIGSTSQAGLTANGAKTGKEYDDTNLYIGYLPPNLDDDGLIQLFSPYGDIVMAKVIKDRVTGLSKGYGFVKYSDVAQANQAIASMNGYRLEGRVIAVRVAGKPPQPAVPPGPPAPTMPTYPGSGQAVGGYPSQHFTPGGPLGNVPPGGYMGAPVPWGPPVPPYASYAPPPPGSSMYAPVQGQSMPSYGVQYPMSHQTIPPGAPSSSVPSSEAQQSFPPGVQSQNNTSGPSSLPNNTYGNSLPGMPPNVQPSYPPSSLGYPSYYGVAPPPVSHSMDHSQGMGTVPWASNQPAPPPVSSAEQTTYGGDSEYEKFMAEMK* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01344 867 PANTHER RNA-BINDING PROTEIN RELATED 187 705 IPR045071 -
Eupl14g01344 867 FunFam splicing factor 1 452 505 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 737 802 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 212 230 - -
Eupl14g01344 867 Pfam Splicing factor 1 helix-hairpin domain 219 328 IPR032570 -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 37 230 - -
Eupl14g01344 867 Gene3D K Homology domain, type 1 329 451 IPR036612 GO:0003723
Eupl14g01344 867 Gene3D - 452 505 - -
Eupl14g01344 867 ProSiteProfiles Zinc finger CCHC-type profile. 454 468 IPR001878 GO:0003676|GO:0008270
Eupl14g01344 867 SMART c2hcfinal6 479 495 IPR001878 GO:0003676|GO:0008270
Eupl14g01344 867 SMART c2hcfinal6 453 469 IPR001878 GO:0003676|GO:0008270
Eupl14g01344 867 MobiDBLite consensus disorder prediction 86 128 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 534 563 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 50 85 - -
Eupl14g01344 867 FunFam splicing factor-like protein 1 324 452 - -
Eupl14g01344 867 SMART kh_6 332 424 IPR004087 GO:0003676
Eupl14g01344 867 Gene3D - 245 324 IPR047086 -
Eupl14g01344 867 Gene3D - 553 657 IPR012677 -
Eupl14g01344 867 ProSiteProfiles Type-1 KH domain profile. 347 419 - -
Eupl14g01344 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 576 645 IPR000504 GO:0003723
Eupl14g01344 867 Pfam KH domain 347 390 IPR004088 GO:0003723
Eupl14g01344 867 MobiDBLite consensus disorder prediction 737 795 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 182 204 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 820 867 - -
Eupl14g01344 867 SMART rrm1_1 575 648 IPR000504 GO:0003723
Eupl14g01344 867 FunFam splicing factor-like protein 1 552 656 - -
Eupl14g01344 867 SUPERFAMILY RNA-binding domain, RBD 570 674 IPR035979 GO:0003676
Eupl14g01344 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 574 652 IPR000504 GO:0003723
Eupl14g01344 867 MobiDBLite consensus disorder prediction 129 178 - -
Eupl14g01344 867 MobiDBLite consensus disorder prediction 534 565 - -
Eupl14g01344 867 CDD KH-I_BBP 331 424 - -
Eupl14g01344 867 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 332 458 IPR036612 GO:0003723
Eupl14g01344 867 SUPERFAMILY Retrovirus zinc finger-like domains 450 496 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g01344 Eupl-Chr14 31363990 31368905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g01344 574 719 Eukaryotic Initiation Factors Gene Family AT3G16380 29.814 6.02e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01344 K13095 - nnu:104602392 1155.2