Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01232 ATGGAAGACGATGTATTGGAAGAGCTACTAAATGTAGAGGTGGAACTACAAGAAGTCCAAGATCAGATAAAGATACTGCTTGATCGGCAAGAGAAGCTGTACGAGCGACACTCCGAACTGAAGACACTATTGGAAGAATGTAAAGCATCTGGAAGTCCTACCAATGTTGGCGCTTCGGTTGCTGTAGAGAATTGGTCAGGGCAGTTTGAATGGGATTCTCGAGCTGATGATGTTAGATTCAATGTTTTTGGCATTTCCACTTATCGTGCAAATCAGCGGGAGATAATAAATGCAGTCATGAGTGGAAGAGATGTTCTGGTGATAATGGCTGCGGGTGGTGGCAAGAGCCTATGTTACCAACTCCCGGCCATTCTTCATGATGGAGTTGCTCTTGTCGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGGTGATGGGGTTGGCTGCTTTAGGCATCCCAGCATACAAGTTGACATCAACAACCAGTAAGGAAGATGAAAGATTCATATACAAGGCTCTTGAAAAAGGTGAAGGAGAACTTAAGATTTTGTATGTCACACCAGAAAAGATATCGAAGAGCAAGAGATTTATGTCAAAGCTTGAAAAGTGTCATCATGCCGGTCGTCTCTCTCTTATTTCTATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGTCCTGACTACAAGAACCTTGGGATTTTGAAGACTCAGTTTCCAAATGTTCCAGTGGTTGCTTTGACTGCAACTGCTACTAAGAAGGTCCAAACAGATCTGATGGAGATGCTACATATTTCAAAATGCATCAAATTTGTTAGCACTGTGAACAGACCTAATCTCTTTTATATGGTGCGAGAGAAGTCATCTGTCGGAAAGGTGGTTATTGATGAAATTGCAGAATTTATACAAGGTTCTTACCCAAATAATGAGTCTGGGATAGTTTATTGCTTCTCTAGAAAGGAATGTGAACAGGTTGCAAAGGAATTGTTTCAACGAGGAATTTCAGCCAATCATTATCATGCAGATATGGATGTAAATGCTCGTGAGAAAGTTCATATGCGGTGGAGTGGTAACAAGTTGCAGGTTATTGTGGGTACGGTTGCATTTGGTATGGGCATCAATAAGCCAGATGTCAGGTTTGTCATCCATCACAGCCTAAGTAAATCAATGGAGACGTACTACCAGGAAAGTGGGCGAGCAGGACGAGATGGGCTTCCTTCTGAATGCCTACTCTATTTTAGGCCCGCTGATGTTCCTCGGCAGAGTTCGATGGTCTTCTATGAGAATTCTGGATTGCAAAATCTCTATGACATGGTGCGATATTGTCAGTCTAAAAGAGAATGCCGTCGAAGTGCTTTTTTCCGGCATTTTGCTGAGCCATTACAAGATTGCAATGGGATGTGTGACAACTGTGCATATGAAAATGAGCTCAAGGAAGTCGATGTCACTCGTCCTGCTAAACATATGGTTTCACTGCTCCGTGAGATGCAAGAGAATGACCAAAGGGTGACAGTGTTGCAACTTGTGGACAAAATCAAGGTCAAGCTTAAAGAACCAGGTTCTGACCTTAGGAAAGAGGAAACAGAGCAGCTTATTGTTCAGCTTATACTAGATCGTGTTTTGAAAGAAGAATTTCAGCACACCGCTTATGCGACAAATGCTTATGTAACGATAGGACCACTGTGGAAGCAAGTATTGCATGGGAAGAATGAGGTTAAGCTCAAGATATGCAGCGGACAGAAGAGTAAATCGGGCAACAGAAAGGCTGCTAAGCACAGTCTATTGTCGTCAGGTTTGGAGATTAAGCTTGATGAGCTGCGGAAGGAACTATCTTCTATTCATGGGGGTATATTCCCTCATGCTGTATTGTCCACTCAACAGATCAGCATGCTAAGCTCCCAAAAACCAACCTCCATTGAGCAGATGGAGAAGATAATTGGAAAGTTGAAGACAGAGAAGTATGGAAGTAGAATTCTTGAACAAATTCAGAAGTTTATTGAGTCTGGTCAACCCGACGGTGATTTGCAGAACGAAGGCAGTGAAAATAGAGCTAAGAAGAGGTTGAAGTCTAAAAAAGCTCTTGTTCTCATTGAGAGCAGCGGAGATGAAGGAGAATAG 2124 0.428 MEDDVLEELLNVEVELQEVQDQIKILLDRQEKLYERHSELKTLLEECKASGSPTNVGASVAVENWSGQFEWDSRADDVRFNVFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILHDGVALVVSPLLSLIQDQVMGLAALGIPAYKLTSTTSKEDERFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATKKVQTDLMEMLHISKCIKFVSTVNRPNLFYMVREKSSVGKVVIDEIAEFIQGSYPNNESGIVYCFSRKECEQVAKELFQRGISANHYHADMDVNAREKVHMRWSGNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPADVPRQSSMVFYENSGLQNLYDMVRYCQSKRECRRSAFFRHFAEPLQDCNGMCDNCAYENELKEVDVTRPAKHMVSLLREMQENDQRVTVLQLVDKIKVKLKEPGSDLRKEETEQLIVQLILDRVLKEEFQHTAYATNAYVTIGPLWKQVLHGKNEVKLKICSGQKSKSGNRKAAKHSLLSSGLEIKLDELRKELSSIHGGIFPHAVLSTQQISMLSSQKPTSIEQMEKIIGKLKTEKYGSRILEQIQKFIESGQPDGDLQNEGSENRAKKRLKSKKALVLIESSGDEGE* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01232 707 Pfam Helicase conserved C-terminal domain 310 405 IPR001650 -
Eupl14g01232 707 CDD DEXHc_RecQ1 70 278 - -
Eupl14g01232 707 Gene3D - 478 579 IPR036388 -
Eupl14g01232 707 Gene3D HRDC domain 599 670 IPR044876 -
Eupl14g01232 707 Gene3D - 42 278 IPR027417 -
Eupl14g01232 707 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Eupl14g01232 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 271 IPR014001 -
Eupl14g01232 707 SMART helicmild6 325 406 IPR001650 -
Eupl14g01232 707 CDD SF2_C_RecQ 279 415 - -
Eupl14g01232 707 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Eupl14g01232 707 Gene3D - 279 476 IPR027417 -
Eupl14g01232 707 Coils Coil 2 36 - -
Eupl14g01232 707 SMART RQC_2 483 580 IPR018982 GO:0006260|GO:0006281|GO:0043138
Eupl14g01232 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 421 IPR027417 -
Eupl14g01232 707 NCBIfam RecQ family ATP-dependent DNA helicase 81 506 IPR004589 GO:0004386|GO:0006310
Eupl14g01232 707 FunFam ATP-dependent DNA helicase 279 475 - -
Eupl14g01232 707 PANTHER DNA HELICASE RECQ FAMILY MEMBER 66 660 - -
Eupl14g01232 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Eupl14g01232 707 Pfam RecQ zinc-binding 418 474 IPR032284 -
Eupl14g01232 707 Pfam DEAD/DEAH box helicase 90 258 IPR011545 GO:0003676|GO:0005524
Eupl14g01232 707 SUPERFAMILY HRDC-like 604 673 IPR010997 GO:0000166|GO:0044237
Eupl14g01232 707 FunFam ATP-dependent DNA helicase 479 579 - -
Eupl14g01232 707 FunFam ATP-dependent DNA helicase 45 278 - -
Eupl14g01232 707 SMART ultradead3 84 287 IPR014001 -
Eupl14g01232 707 FunFam ATP-dependent DNA helicase 599 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g01232 Eupl-Chr14 27337902 27436011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g01232 83 406 Eukaryotic Initiation Factors Gene Family AT3G13920 22.478 1.87e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01232 K10899 - nnu:104611560 1191.02