Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01189 ATGCCTCCAAGAACGGTGAAGAAAGGGGCGAGCGCGCCTGGGCCAAAGAGAACTCCAGGGAGAGCGGCCAAAGGGACACCCAAGCCCCAAAATCAACAGCAAGTAACAGAAGAAGCGGTGAAGATTGAAGATGTTTCGGTTTCGGTTTCGGTTTCCGTCGTTGAAGTTAAAAAAGAGAGAATAAAATTTGAGGAGAACCTAAATGAGAAACCGGTGGAGGAAACAGAACTAACCGGATCCGTTTCTGTTAAAGAAGATGATGATGTGAAGGAGGCTCTTGACGAAGACGACAAAGGTGAAAGGTTAGAGTTGGAGGATAATGAACCAGAATATGAAGCTGAAGAAGATGGTGGGGTGGACTATGATGAGAAGGAAATTGATCAAGATGATATTCATAAGGAAGGTGATGAAGAGGCAAGAGGAGATGTAAGTGAAGAGGAAGAGGGTGACATGGTTGAGGAAATGGAAGATGTTGCTGAGGATGTTGAAGGTGAAGATGATGAAGAGAATGGTGTGGAAGAGCACGAAGGCACGGTTGATGGAGAGGATGAAGAGCACCATGAAGTTGTTAAGGAGAGGCGTAAGCGTAAGGAGTTTGAAGTATTTGTTGGGGGCTTGGACAAGGATGCAACTGAAGATGATCTTAAGAAAGTTTTTAGTGAAGCTGGTGAGGTTACTGAAGTCAGGCTGATGATGAACCCTCTGACTAAGAAAAACAAGGGCTTTGCATTCTTACGTTTTGCAACTGTAGAACAAGCAAAGCGAGCTGTAACAGAGCTCAAGAACCCAGTGGTCAATGGGAAACAGTGCGGCGTGTCTCCAAGTCAAGATAGCGACACCCTTTTCCTGGGAAATATTTGCAAGACCTGGACAAAAGAAGCTTTGAAAGAGAAGTTGAAGCATTATGGAATTGAGAATGTTGAGGATATTACGTTGGTTGAAGATAGTAACAACGAGGGAATGAATCGTGGGTTCGCTTTCTTGGAATTTCCATCTCGTTCAGATGCCATGGATGCTTATAAGCGTCTGCAAAAGGCAGATGTTGTGTTTGGAGTTGATAGGACTGCAAAGGTTGCTTTTGCAGATTCTTTCATTGAGCCAGATGACGAAATCATGGCACAGGTTAAAACGGTATTTCTGGATGGTGTGCCTGCTTCATGGGACGAAGATCGTGTAAAGGAGCATCTCACGAAATTTGGGGAGATTGAAAAGATTGAACTCGCCCGCAATATGCCATCAGCCAAGAGAAAGGATTTTGGGTTTGTAAGTTTTGAAACCCATGATGCGGCAGTGGCATGTGCGGAAGCCATTAACAATGCAGAATTGGGCGAGGGAGACAAGAAGGTAAAAGTTAGGGCCAGATTATCAAGGCCACATCAGAGAGGTAGAGGGAAGCATGCTGCTCGAGGCGATTTTCGGCTTGGACGTGGGGCTCCACGAGGTGTATGGGGTTCCTGGGGTCGTCCAGCACCTCGTAGCTTCCCTGGACATGGTTCTAGAGGAATTGGAGGCCGCATGGCAATGGCTGGCGTTCGTGGATTCAAGAGGCCATTTGGATTTAGAGATAGACGCCCTGTTATGGCAGCAACAGAGAGAGTTAGGCCCCTGCCACCCATAGAGAGGTCTTACAACAGGAGACCTATCCCGAAGAGCCATCCAAAGAGGGATTATGGTCGGCGCGATGATCTTCCTCCAAGAAGCAGAGCTGCTGCAGAGTATGGTTCCAGAGCTGCCACAGAGAGACGGTCATCGTACAGGGATGACTATCTTTCCCATGGATCTGGATACTCTGATGATGTGCCTCGCAGTGCTTCTCGCACTGCGGCAAGGAGGGGCTATGTAGATGAAGGCTATGGTCGGAGGTTTGAAAGGCCTCCTCCAAGTTACCACGAAGGACGTGCCAGCGACTACGACTCAATTTCTGGATCAAAACGTCCATACTCTTCTTTGGACGATATTCCTCCACGTTACGCTGATGCCAGTGTTCGCCAGTCAAGGCCTCGTGTGGACTATGGAGTTGGTGGCAGCACTTCTCAATATGGTGATGCTTACAGTGACAGGCTTGGGAGATCTCACCTAGGCTATGGTGGTAGCAGCAGAAGTGCTGTCTCCACTCAGGACTCACATGGGCTGTATGGAAGTCGCCGGGGTATGGGTTATGGTGGAGGTTCATATGGTGGTAGTGATGTTGGTGAAATGTACTCTTCGAGCTTTGGTAGTGATTACACGTCTCGTGGTCCTGATGTTGGTGGTAGCTCTTATTCATCTCTATATTCCAGTCGTAGCATGGGTGGTAGCAGTTACCTGGGAAGTGGTGGTTCTGGGTCGTATTATTGA 2337 0.4788 MPPRTVKKGASAPGPKRTPGRAAKGTPKPQNQQQVTEEAVKIEDVSVSVSVSVVEVKKERIKFEENLNEKPVEETELTGSVSVKEDDDVKEALDEDDKGERLELEDNEPEYEAEEDGGVDYDEKEIDQDDIHKEGDEEARGDVSEEEEGDMVEEMEDVAEDVEGEDDEENGVEEHEGTVDGEDEEHHEVVKERRKRKEFEVFVGGLDKDATEDDLKKVFSEAGEVTEVRLMMNPLTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVSPSQDSDTLFLGNICKTWTKEALKEKLKHYGIENVEDITLVEDSNNEGMNRGFAFLEFPSRSDAMDAYKRLQKADVVFGVDRTAKVAFADSFIEPDDEIMAQVKTVFLDGVPASWDEDRVKEHLTKFGEIEKIELARNMPSAKRKDFGFVSFETHDAAVACAEAINNAELGEGDKKVKVRARLSRPHQRGRGKHAARGDFRLGRGAPRGVWGSWGRPAPRSFPGHGSRGIGGRMAMAGVRGFKRPFGFRDRRPVMAATERVRPLPPIERSYNRRPIPKSHPKRDYGRRDDLPPRSRAAAEYGSRAATERRSSYRDDYLSHGSGYSDDVPRSASRTAARRGYVDEGYGRRFERPPPSYHEGRASDYDSISGSKRPYSSLDDIPPRYADASVRQSRPRVDYGVGGSTSQYGDAYSDRLGRSHLGYGGSSRSAVSTQDSHGLYGSRRGMGYGGGSYGGSDVGEMYSSSFGSDYTSRGPDVGGSSYSSLYSSRSMGGSSYLGSGGSGSYY* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01189 778 MobiDBLite consensus disorder prediction 66 191 - -
Eupl14g01189 778 Gene3D - 280 362 IPR012677 -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 545 567 - -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 529 718 - -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 736 778 - -
Eupl14g01189 778 SUPERFAMILY RNA-binding domain, RBD 278 445 IPR035979 GO:0003676
Eupl14g01189 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 376 456 IPR000504 GO:0003723
Eupl14g01189 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 363 IPR000504 GO:0003723
Eupl14g01189 778 CDD RRM_SF 378 452 - -
Eupl14g01189 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Eupl14g01189 778 FunFam RNA recognition water-stress protein1 366 487 - -
Eupl14g01189 778 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 739 - -
Eupl14g01189 778 SMART rrm1_1 200 273 IPR000504 GO:0003723
Eupl14g01189 778 SMART rrm1_1 377 452 IPR000504 GO:0003723
Eupl14g01189 778 SMART rrm1_1 280 359 IPR000504 GO:0003723
Eupl14g01189 778 MobiDBLite consensus disorder prediction 697 711 - -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 1 37 - -
Eupl14g01189 778 CDD RRM_SF 281 344 - -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 455 474 - -
Eupl14g01189 778 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 134 279 - -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 125 139 - -
Eupl14g01189 778 FunFam Heterogeneous nuclear ribonucleoprotein Q 280 362 - -
Eupl14g01189 778 CDD RRM_SF 201 273 - -
Eupl14g01189 778 SUPERFAMILY RNA-binding domain, RBD 194 277 IPR035979 GO:0003676
Eupl14g01189 778 MobiDBLite consensus disorder prediction 613 631 - -
Eupl14g01189 778 MobiDBLite consensus disorder prediction 89 124 - -
Eupl14g01189 778 Gene3D - 365 486 IPR012677 -
Eupl14g01189 778 Gene3D - 165 279 IPR012677 -
Eupl14g01189 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 443 IPR000504 GO:0003723
Eupl14g01189 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Eupl14g01189 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Eupl14g01189 778 MobiDBLite consensus disorder prediction 140 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g01189 Eupl-Chr14 26075954 26085122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g01189 201 462 Eukaryotic Initiation Factors Gene Family AT2G23350 22.776 6.31e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01189 - - nnu:104609827 997.653