Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl14g01189 | ATGCCTCCAAGAACGGTGAAGAAAGGGGCGAGCGCGCCTGGGCCAAAGAGAACTCCAGGGAGAGCGGCCAAAGGGACACCCAAGCCCCAAAATCAACAGCAAGTAACAGAAGAAGCGGTGAAGATTGAAGATGTTTCGGTTTCGGTTTCGGTTTCCGTCGTTGAAGTTAAAAAAGAGAGAATAAAATTTGAGGAGAACCTAAATGAGAAACCGGTGGAGGAAACAGAACTAACCGGATCCGTTTCTGTTAAAGAAGATGATGATGTGAAGGAGGCTCTTGACGAAGACGACAAAGGTGAAAGGTTAGAGTTGGAGGATAATGAACCAGAATATGAAGCTGAAGAAGATGGTGGGGTGGACTATGATGAGAAGGAAATTGATCAAGATGATATTCATAAGGAAGGTGATGAAGAGGCAAGAGGAGATGTAAGTGAAGAGGAAGAGGGTGACATGGTTGAGGAAATGGAAGATGTTGCTGAGGATGTTGAAGGTGAAGATGATGAAGAGAATGGTGTGGAAGAGCACGAAGGCACGGTTGATGGAGAGGATGAAGAGCACCATGAAGTTGTTAAGGAGAGGCGTAAGCGTAAGGAGTTTGAAGTATTTGTTGGGGGCTTGGACAAGGATGCAACTGAAGATGATCTTAAGAAAGTTTTTAGTGAAGCTGGTGAGGTTACTGAAGTCAGGCTGATGATGAACCCTCTGACTAAGAAAAACAAGGGCTTTGCATTCTTACGTTTTGCAACTGTAGAACAAGCAAAGCGAGCTGTAACAGAGCTCAAGAACCCAGTGGTCAATGGGAAACAGTGCGGCGTGTCTCCAAGTCAAGATAGCGACACCCTTTTCCTGGGAAATATTTGCAAGACCTGGACAAAAGAAGCTTTGAAAGAGAAGTTGAAGCATTATGGAATTGAGAATGTTGAGGATATTACGTTGGTTGAAGATAGTAACAACGAGGGAATGAATCGTGGGTTCGCTTTCTTGGAATTTCCATCTCGTTCAGATGCCATGGATGCTTATAAGCGTCTGCAAAAGGCAGATGTTGTGTTTGGAGTTGATAGGACTGCAAAGGTTGCTTTTGCAGATTCTTTCATTGAGCCAGATGACGAAATCATGGCACAGGTTAAAACGGTATTTCTGGATGGTGTGCCTGCTTCATGGGACGAAGATCGTGTAAAGGAGCATCTCACGAAATTTGGGGAGATTGAAAAGATTGAACTCGCCCGCAATATGCCATCAGCCAAGAGAAAGGATTTTGGGTTTGTAAGTTTTGAAACCCATGATGCGGCAGTGGCATGTGCGGAAGCCATTAACAATGCAGAATTGGGCGAGGGAGACAAGAAGGTAAAAGTTAGGGCCAGATTATCAAGGCCACATCAGAGAGGTAGAGGGAAGCATGCTGCTCGAGGCGATTTTCGGCTTGGACGTGGGGCTCCACGAGGTGTATGGGGTTCCTGGGGTCGTCCAGCACCTCGTAGCTTCCCTGGACATGGTTCTAGAGGAATTGGAGGCCGCATGGCAATGGCTGGCGTTCGTGGATTCAAGAGGCCATTTGGATTTAGAGATAGACGCCCTGTTATGGCAGCAACAGAGAGAGTTAGGCCCCTGCCACCCATAGAGAGGTCTTACAACAGGAGACCTATCCCGAAGAGCCATCCAAAGAGGGATTATGGTCGGCGCGATGATCTTCCTCCAAGAAGCAGAGCTGCTGCAGAGTATGGTTCCAGAGCTGCCACAGAGAGACGGTCATCGTACAGGGATGACTATCTTTCCCATGGATCTGGATACTCTGATGATGTGCCTCGCAGTGCTTCTCGCACTGCGGCAAGGAGGGGCTATGTAGATGAAGGCTATGGTCGGAGGTTTGAAAGGCCTCCTCCAAGTTACCACGAAGGACGTGCCAGCGACTACGACTCAATTTCTGGATCAAAACGTCCATACTCTTCTTTGGACGATATTCCTCCACGTTACGCTGATGCCAGTGTTCGCCAGTCAAGGCCTCGTGTGGACTATGGAGTTGGTGGCAGCACTTCTCAATATGGTGATGCTTACAGTGACAGGCTTGGGAGATCTCACCTAGGCTATGGTGGTAGCAGCAGAAGTGCTGTCTCCACTCAGGACTCACATGGGCTGTATGGAAGTCGCCGGGGTATGGGTTATGGTGGAGGTTCATATGGTGGTAGTGATGTTGGTGAAATGTACTCTTCGAGCTTTGGTAGTGATTACACGTCTCGTGGTCCTGATGTTGGTGGTAGCTCTTATTCATCTCTATATTCCAGTCGTAGCATGGGTGGTAGCAGTTACCTGGGAAGTGGTGGTTCTGGGTCGTATTATTGA | 2337 | 0.4788 | MPPRTVKKGASAPGPKRTPGRAAKGTPKPQNQQQVTEEAVKIEDVSVSVSVSVVEVKKERIKFEENLNEKPVEETELTGSVSVKEDDDVKEALDEDDKGERLELEDNEPEYEAEEDGGVDYDEKEIDQDDIHKEGDEEARGDVSEEEEGDMVEEMEDVAEDVEGEDDEENGVEEHEGTVDGEDEEHHEVVKERRKRKEFEVFVGGLDKDATEDDLKKVFSEAGEVTEVRLMMNPLTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVSPSQDSDTLFLGNICKTWTKEALKEKLKHYGIENVEDITLVEDSNNEGMNRGFAFLEFPSRSDAMDAYKRLQKADVVFGVDRTAKVAFADSFIEPDDEIMAQVKTVFLDGVPASWDEDRVKEHLTKFGEIEKIELARNMPSAKRKDFGFVSFETHDAAVACAEAINNAELGEGDKKVKVRARLSRPHQRGRGKHAARGDFRLGRGAPRGVWGSWGRPAPRSFPGHGSRGIGGRMAMAGVRGFKRPFGFRDRRPVMAATERVRPLPPIERSYNRRPIPKSHPKRDYGRRDDLPPRSRAAAEYGSRAATERRSSYRDDYLSHGSGYSDDVPRSASRTAARRGYVDEGYGRRFERPPPSYHEGRASDYDSISGSKRPYSSLDDIPPRYADASVRQSRPRVDYGVGGSTSQYGDAYSDRLGRSHLGYGGSSRSAVSTQDSHGLYGSRRGMGYGGGSYGGSDVGEMYSSSFGSDYTSRGPDVGGSSYSSLYSSRSMGGSSYLGSGGSGSYY* | 779 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 66 | 191 | - | - | |
Eupl14g01189 | 778 | Gene3D | - | 280 | 362 | IPR012677 | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 545 | 567 | - | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 529 | 718 | - | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 736 | 778 | - | - | |
Eupl14g01189 | 778 | SUPERFAMILY | RNA-binding domain, RBD | 278 | 445 | IPR035979 | GO:0003676 | |
Eupl14g01189 | 778 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 376 | 456 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 279 | 363 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | CDD | RRM_SF | 378 | 452 | - | - | |
Eupl14g01189 | 778 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 199 | 277 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | FunFam | RNA recognition water-stress protein1 | 366 | 487 | - | - | |
Eupl14g01189 | 778 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 26 | 739 | - | - | |
Eupl14g01189 | 778 | SMART | rrm1_1 | 200 | 273 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | SMART | rrm1_1 | 377 | 452 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | SMART | rrm1_1 | 280 | 359 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 697 | 711 | - | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Eupl14g01189 | 778 | CDD | RRM_SF | 281 | 344 | - | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 455 | 474 | - | - | |
Eupl14g01189 | 778 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 134 | 279 | - | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 125 | 139 | - | - | |
Eupl14g01189 | 778 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 280 | 362 | - | - | |
Eupl14g01189 | 778 | CDD | RRM_SF | 201 | 273 | - | - | |
Eupl14g01189 | 778 | SUPERFAMILY | RNA-binding domain, RBD | 194 | 277 | IPR035979 | GO:0003676 | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 613 | 631 | - | - | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 89 | 124 | - | - | |
Eupl14g01189 | 778 | Gene3D | - | 365 | 486 | IPR012677 | - | |
Eupl14g01189 | 778 | Gene3D | - | 165 | 279 | IPR012677 | - | |
Eupl14g01189 | 778 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 378 | 443 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 201 | 269 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 281 | 346 | IPR000504 | GO:0003723 | |
Eupl14g01189 | 778 | MobiDBLite | consensus disorder prediction | 140 | 179 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl14g01189 | Eupl-Chr14 | 26075954 | 26085122 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl14g01189 | 201 | 462 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 22.776 | 6.31e-15 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl14g01189 | - | - | nnu:104609827 | 997.653 |