Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01146 ATGACGTCAGCAACCGTACGGCCACCTGGATTCCGAGGTCCTAAGGTCATTCCTTTTCTGAGAGGAAATGCATGGGAGCAACCACCTCCAGATCTAACATCTTACTTGTACAAGAATCGAATTGTATACTTGGGCATGTCTCTCGTTCCTTCTGTGACAGAGTTGATCCTCGCAGAGTTTTCATACCTTCAGTATGAGGATGCTGAGAAGCCAATTTATCTATACATAAACTCCACTGGCACAACCAAGGGCGGAGAAAAGTTGGGCTATGAGACAGAGGCATTTGCAATCTATGATGTTATGAGGTATGTTAAACCACCTATTTTCACACTTTGCGTTGGTAATGCTTGGGGTGAAGCAGCCTTGCTTCTGGCTGCTGGTGCGAAAGGAAACCGTTCTGCTTTGCCATCATCAACAATCATGATAAAGCAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATATTGAACTTGCAAGAAAAGAAGTAAAAAATGTGAAAACAGAGTTGGTTAATCTCTACTCAAGACACATAGGCAAATCGCCTGAACAGATCGAGGAGGATATCAGGCGTCCAAAATATTTCAGTCCTAGTGAAGCAGTTGAATATGGTATTATTGATAAGAGAGCTCTCTTAGACATGGATCTTCTGGTACTTGGCTTCTCACTCATGGTGCTCTTACCTGCACTGTGTAGCTCCCAGGACACTTTTACGTGCTCGAGAGCGACGTATTATGGTAGCCCTGATTGCTTAGGGACTCCAAGTGGAGCATGTGGATATGGTGAATTCGGAAGAAACATCAATGGTGGAGATGTGGGGGCTGTCTCGAGGCTATACAGGAACGGCACCGGGTGTGGTGCTTGCTACCAGGTTAGGTGCAGCATACCGCAGCTCTGCACCGATAACGGGGTGAGGATTGTGGTCACCGACCACGGTGAGGGCGACAACACTGACTTCATCGTTAGCCCTCATGGCTTCACAAAATTGGCTCATCCGAACATGGCAAAAGAATTGATGGCATATGGTGTAGTCGACGTAGAGTACAGAAGGATCTCATGCCAGTATCCGGGGTACAACCTCATGTTCAAAGTCCATGAATATAGCAAGTTTCCAGACTACTTGGCCATAGTCATCTTATACCAAGCTGGTCAAAAAGACATTACAGCCGTCGAATTGTGGCAGGAGGATTGTGAGCAATGGAGGGGGATGCGCAAGGCCTACGGCGGAGTTTGGGACATGGCTAACCCCCCTCCAAAGGGGGTGCTTAACTTGAGGTTCCAACTGAGCGGAGGTGACTGGCAAAAGTGGGTACAAGTGAGAAATGTGATCCCTAGTGACTGGAAGGCAGGGGTTGCGTATGACTCAGCCATTCAGCTTTCTTAG 1383 0.4736 MTSATVRPPGFRGPKVIPFLRGNAWEQPPPDLTSYLYKNRIVYLGMSLVPSVTELILAEFSYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIELARKEVKNVKTELVNLYSRHIGKSPEQIEEDIRRPKYFSPSEAVEYGIIDKRALLDMDLLVLGFSLMVLLPALCSSQDTFTCSRATYYGSPDCLGTPSGACGYGEFGRNINGGDVGAVSRLYRNGTGCGACYQVRCSIPQLCTDNGVRIVVTDHGEGDNTDFIVSPHGFTKLAHPNMAKELMAYGVVDVEYRRISCQYPGYNLMFKVHEYSKFPDYLAIVILYQAGQKDITAVELWQEDCEQWRGMRKAYGGVWDMANPPPKGVLNLRFQLSGGDWQKWVQVRNVIPSDWKAGVAYDSAIQLS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01146 460 Pfam Clp protease 31 208 IPR023562 -
Eupl14g01146 460 Gene3D - 354 456 IPR036749 -
Eupl14g01146 460 Pfam Lytic transglycolase 276 348 IPR009009 -
Eupl14g01146 460 PRINTS Clp protease catalytic subunit P signature 110 127 IPR001907 GO:0004176|GO:0004252|GO:0006508
Eupl14g01146 460 PRINTS Clp protease catalytic subunit P signature 71 91 IPR001907 GO:0004176|GO:0004252|GO:0006508
Eupl14g01146 460 PRINTS Clp protease catalytic subunit P signature 31 46 IPR001907 GO:0004176|GO:0004252|GO:0006508
Eupl14g01146 460 PRINTS Clp protease catalytic subunit P signature 131 150 IPR001907 GO:0004176|GO:0004252|GO:0006508
Eupl14g01146 460 PRINTS Clp protease catalytic subunit P signature 188 207 IPR001907 GO:0004176|GO:0004252|GO:0006508
Eupl14g01146 460 SUPERFAMILY Barwin-like endoglucanases 225 357 IPR036908 -
Eupl14g01146 460 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 255 358 IPR007112 -
Eupl14g01146 460 Gene3D - 228 353 IPR036908 -
Eupl14g01146 460 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 25 208 IPR023562 -
Eupl14g01146 460 Coils Coil 156 176 - -
Eupl14g01146 460 CDD S14_ClpP_2 31 208 IPR001907 GO:0004176|GO:0004252|GO:0006508
Eupl14g01146 460 FunFam ATP-dependent Clp protease proteolytic subunit 12 213 - -
Eupl14g01146 460 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 372 455 IPR007117 -
Eupl14g01146 460 Pfam Expansin C-terminal domain 361 444 IPR007117 -
Eupl14g01146 460 SUPERFAMILY PHL pollen allergen 359 455 IPR036749 -
Eupl14g01146 460 CDD DPBB_EXLB_N 240 353 - -
Eupl14g01146 460 SUPERFAMILY ClpP/crotonase 26 208 IPR029045 -
Eupl14g01146 460 Gene3D - 13 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g01146 Eupl-Chr14 23758397 23770976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g01146 216 460 Expansin Gene Family AT4G17030 57.317 2.44e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01146 - - msin:131249841 429.483