Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01070 ATGTCGCCAGAGATGGAGATGTACGGACTTCCTGCCTCTGATTTCTTCCACATCGACGACCTCCTCGACTTCTCAAACGACGACTTCTTCTCCTCCACTACCACCACCAACGATTCCCACCTCCCCGCACAGGAAAATCCATCCGGAATCCGCCCTTCCACCACCGCCACCGACATTACTAACCAAAACCGGACACCTGATTTCCCCGACGATCTCTGCGTTCCTAGCGACGATGTAGCAGAGCTGGAATGGCTGTCGAAGTTCGTGGACGACTCGTTCTCTGACTTCCCGATCAACGATCTTGCCGGAAATACAAACTTCCGGCATGATGCGTCAGTTCCTGGCCGAGCTAGGACTAAACGCTCTAGAGCAGCGACGACGCATAACAGCTGGACTTTCTTGCCAGAATCTGACATTTTGGCTACTGGTAAGTCTAAGCAAACTAGTTCAAATAACAATAAGAAGAAGGAGAGTTCTTCTTCTTCGGCATCTTCAGGTGTTGCCGCCGGAGATCAGTTCTCCTCGTTGTCGCCTTCATCAGGAGGACGTAAATGCACACACTGCGAATCAGAGAAAACGCCGCAGTGGCGCACAGGACCAATGGGACCTAAGACGCTATGCAACGCGTGTGGCGTACGATACAAATCAGGTCGACTTGTTCCGGAGTACCGTCCGGCGGCGAGTCCAACGTTCGTGTTAACTCAGCACTCCAACTCTCATCGGAAAGTAATGGAACTCCGGCGACAGAAAGAAACTGTCCGGCAAGATAACAACCGCCACGAGTTCTACCACCACCCTCATCAAGACTTCAAGGTTTGCTGA 822 0.5207 MSPEMEMYGLPASDFFHIDDLLDFSNDDFFSSTTTTNDSHLPAQENPSGIRPSTTATDITNQNRTPDFPDDLCVPSDDVAELEWLSKFVDDSFSDFPINDLAGNTNFRHDASVPGRARTKRSRAATTHNSWTFLPESDILATGKSKQTSSNNNKKKESSSSSASSGVAAGDQFSSLSPSSGGRKCTHCESEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKETVRQDNNRHEFYHHPHQDFKVC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01070 273 PIRSF Txn_fac_GATA_plant 5 272 IPR016679 GO:0003677|GO:0005634|GO:0045893
Eupl14g01070 273 Pfam GATA zinc finger 185 218 IPR000679 GO:0006355|GO:0043565
Eupl14g01070 273 MobiDBLite consensus disorder prediction 104 129 - -
Eupl14g01070 273 SMART GATA_3 179 229 IPR000679 GO:0006355|GO:0043565
Eupl14g01070 273 PANTHER GATA TRANSCRIPTION FACTOR 12 252 - -
Eupl14g01070 273 ProSitePatterns GATA-type zinc finger domain. 185 210 IPR000679 GO:0006355|GO:0043565
Eupl14g01070 273 MobiDBLite consensus disorder prediction 142 199 - -
Eupl14g01070 273 MobiDBLite consensus disorder prediction 142 184 - -
Eupl14g01070 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 243 - -
Eupl14g01070 273 CDD ZnF_GATA 184 231 IPR000679 GO:0006355|GO:0043565
Eupl14g01070 273 Gene3D - 181 263 IPR013088 GO:0006355|GO:0008270
Eupl14g01070 273 ProSiteProfiles GATA-type zinc finger domain profile. 179 215 IPR000679 GO:0006355|GO:0043565
Eupl14g01070 273 FunFam GATA transcription factor 176 261 - -
Eupl14g01070 273 MobiDBLite consensus disorder prediction 34 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g01070 Eupl-Chr14 18570544 18571849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g01070 5 255 C2C2-Gata Transcription Factor Family AT2G45050 51.969 1.70e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl14g01070 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01070 - - nnu:104602363 315.464