Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01043 ATGGGGAGCACTGGTGAAGCTGACCGGAAGCGGCGTCACTTCAGCTCTCTCTCCCCCACCGGTGCCGCTGCTAAGAAGCATCCGTTCTTGCCCTGTTCGGAAGAGAAAAAGCTTGACACTGCTGTACTACAATTTCAAAATCAAAAACTTGTTCAGCAATTAGAAGCTCAGAAGGTTGAGTATTTTGCCCTTGAGAATAAATTCTGTCAGGTGAAGGAGAAACAACAGGCTTATGATGACACATTAATAGTGGTCAATAGGTCTTGGAATCAGTTGGTTGACAACTTGGAATCAAGTTCCTTTCGTGCAAGAAGCTCTTGGAGCAGTGGGCAGGATGTGAAACATTCATCAATAACGGGGGATGAGGCATCATCTCCCCCAGAGGATACTTTTCTTTGCAGGCTTCTAGAGACGGGTGCAACTGAAAGCTGCTCTGCAAATATCTCCCCTAATCAAATGGAAATTGATAACCAAATTGCCAGTGGAACAGCTAGAAGCATCTTACAAAATATAGTAGCTGCTATTAATGACCTGTGGTATTTTAGGGATGGACTTTCTGCTGCGCTGCTGCAGACATTGCCAGATGAGCCCAGCAGACGAAAGACATCTAGTGATTTAGAGATGGAGCTTAAGAACTTGAGACTGGCACTTGGTGATCTTCATTTGAGGCATAAATCAGTGGCAAGTGAAGTGCAGAGCTATCGAGGCAATAATGCAAAGAATAAAGCTGAACTGAAACGCTTGGCAGGGGAATTGGAGAGTACTGTTGCAGAGTTGGAAGAAAGCAACTCTAAACTGGCTACTCTCAAAGCACAAAGAGATGCATTCAAAGGTGCATCTTTCCCTGTATTAAACTTGGGGAACAATCATGTTGCTGGAGAAAAGGCCAGAGATAAGCAAAAAAATTTGCAAGATATGGAGTCTACACTCAAGGAGTTGTTGGAGTTGGCTTCATGTCGATTGCTAGAACTCAAGACACTCCATGAAGAAAGGATAAGAATTTTGAAGCAGTTATCCAATTTGCAGCAGATCGCTTTGAAGGATGTGAAGAGTATTTCCTCGTCCAAAGCCTACCTCTTGGTAAACAATCAGCTTGAAAAATCAAAAGCAGAAGTTGTCCAGTATCAGGCCTTATTTGAGAAACTACAGGTTGAGAAGGATAACTTTGCTTGGCGGGAAAAAGAAATGAATGTGAAAGTTGATTTAGCTGATGTTTTTCGAAGAGCTTCTGCAGTTGCTGACTACCGAATAGCTGATCTAGAAAAAGAGATACAGAAACAGATTGATGAAAGAAATCTGCTTGAAACTAAGCTAAAAGAGGCTTCAAGAGAACCAGGAAGGAAAGAAATCATTGCTGAATTTAAAGCCTTGGTTTCTACATTCCCCAAGAACATGGGTGTTATGCAAAGTCAACTGAGTAAATACAAACAAGCTGCTTCAGAGGTTCATTCTCTACGAGCTGAAGTTCTGTCTCTGTCTAATATTCTTGATAGGAAGGCAAATGAGTTGGAAACTATTTCTGGTAGATCTGCTGAACAGATTGCTGAGATACAAAAATTGCAAGCTGTGGTCCGTGATTTGAAGGAAAGTGATCAAGAGTTGAAGCTAATTCTAGAAATGTATAGACGTGAATCCACTGATTCCAGGGATGTCATAGAAGCAAGAGATTTGGAATACCAGGCATGGGCACAAGTTCAAAGTCTCAAATCTTCTCTTGATGAGCATAGCTTGGAGTTGCGTGTTAAAGCAGCAAATGAAGCTGAAGCCATATCCCAACAGAGGCTGGCGACAGCAGAAGCTGAGATTGCTGACCTGAGACAGAAGTTGGAAGCTTCTGGAAGGGATGTATCTAGTCTTTCTGAAGTCCTGAAATCTAAACATGAGGAGGGTGAAGCCTACTTATCAGAGATTGAGTCAATTGGGCAGGCATACGAAGATATGCAAACTCAAAACCAACACCTGTTGCTACAAATCACAGAGAGAGATGACTACAACATCAAGCTCGTTTTAGAGGGTATGAGGGCAAGACAGCTGCAAGATGCTTTGCGCATGGGAAAACAAGCTATGGAAAAAGAGTTGCAGCAAGTGAATGCATCTCTGAATTTCTATGATTTCAAAGGAGCACGAATTGAAGACCAGCTGAAAATGTGCTCAGAGCATGTTGAGAAACTTGCGGAAGATAAGTGGCAGAGCTTAGCTGCTGTGGAGAATGCCCAAAAGAGGCTGTTGGATGTAAGGAGAGAATCTCAGCAGTTAAAGGAGTCACTGGAGGAATCTCAGTCCAAGGTTGGGAGAAGCCGAGTGGGTGTTGCAGAGCTGCAGATAGAACTAGAGAAAGAGAGGTTTAACAAGAAAAGAATAGAGGAGGAGTTGGAAGTCTTGACAAGGAAAGCTACACTTCTTAGTGTACACACTGAGGGGTCATCAGTCTTGGAGAAGCTTCAGCATGAAATCAGAGAATACAGGGAAATACTCAAGTGCAGTATCTGCCACGACAGACCTAAGGAGGTTGTCATCACCAAGTGCTACCATCTGTTCTGCAACACCTGTGTCCAGAGAACACTTGACGCTCGCCACCGGAAGTGTCCAGTCTGTGCTGCCAGTTTTGGGCCTAGTGATGTCAAATCCGTCTACATATGA 2640 0.4333 MGSTGEADRKRRHFSSLSPTGAAAKKHPFLPCSEEKKLDTAVLQFQNQKLVQQLEAQKVEYFALENKFCQVKEKQQAYDDTLIVVNRSWNQLVDNLESSSFRARSSWSSGQDVKHSSITGDEASSPPEDTFLCRLLETGATESCSANISPNQMEIDNQIASGTARSILQNIVAAINDLWYFRDGLSAALLQTLPDEPSRRKTSSDLEMELKNLRLALGDLHLRHKSVASEVQSYRGNNAKNKAELKRLAGELESTVAELEESNSKLATLKAQRDAFKGASFPVLNLGNNHVAGEKARDKQKNLQDMESTLKELLELASCRLLELKTLHEERIRILKQLSNLQQIALKDVKSISSSKAYLLVNNQLEKSKAEVVQYQALFEKLQVEKDNFAWREKEMNVKVDLADVFRRASAVADYRIADLEKEIQKQIDERNLLETKLKEASREPGRKEIIAEFKALVSTFPKNMGVMQSQLSKYKQAASEVHSLRAEVLSLSNILDRKANELETISGRSAEQIAEIQKLQAVVRDLKESDQELKLILEMYRRESTDSRDVIEARDLEYQAWAQVQSLKSSLDEHSLELRVKAANEAEAISQQRLATAEAEIADLRQKLEASGRDVSSLSEVLKSKHEEGEAYLSEIESIGQAYEDMQTQNQHLLLQITERDDYNIKLVLEGMRARQLQDALRMGKQAMEKELQQVNASLNFYDFKGARIEDQLKMCSEHVEKLAEDKWQSLAAVENAQKRLLDVRRESQQLKESLEESQSKVGRSRVGVAELQIELEKERFNKKRIEEELEVLTRKATLLSVHTEGSSVLEKLQHEIREYREILKCSICHDRPKEVVITKCYHLFCNTCVQRTLDARHRKCPVCAASFGPSDVKSVYI* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01043 879 Coils Coil 242 272 - -
Eupl14g01043 879 MobiDBLite consensus disorder prediction 1 15 - -
Eupl14g01043 879 SUPERFAMILY RING/U-box 820 878 - -
Eupl14g01043 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Eupl14g01043 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Eupl14g01043 879 Coils Coil 735 762 - -
Eupl14g01043 879 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Eupl14g01043 879 Coils Coil 417 444 - -
Eupl14g01043 879 Coils Coil 588 615 - -
Eupl14g01043 879 Coils Coil 510 530 - -
Eupl14g01043 879 SMART ring_2 827 865 IPR001841 -
Eupl14g01043 879 Coils Coil 296 316 - -
Eupl14g01043 879 Coils Coil 770 797 - -
Eupl14g01043 879 CDD RING-HC_Bre1-like 819 877 - -
Eupl14g01043 879 Coils Coil 365 385 - -
Eupl14g01043 879 Pfam Zinc finger, C3HC4 type (RING finger) 825 867 - -
Eupl14g01043 879 Coils Coil 47 67 - -
Eupl14g01043 879 PANTHER RING FINGER PROTEIN-RELATED 1 879 IPR013956 GO:0004842|GO:0010390
Eupl14g01043 879 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g01043 Eupl-Chr14 17390192 17419268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g01043 805 874 RAD5 or RAD16-like Gene Family AT5G05130 34.286 1.37e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01043 K10696 - nnu:104602398 1260.36