Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00925 ATGTTGGATAAGGACACGAAACCATTCATTAAAGTTGATCTAATAGGGTTTTATGGCTGGTACAACAATCTATTAGATGTCAAAGCGGTGAAGAAGGAATTCGTCGCCCACTTCGTTACTTCGATACTTCGATACTTCGATACTTCGTTCGTCTTCAGATTCGTCAAGATGCAGATCTTTGTTAAGACCCTTACTGGCAAGACCATCACCCTTGAAGTTGAAAGTTCTGACACAATTGACAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAACAAAGGCTCATCTTTGCAGGAAAACAGCTTGAGGATGGCCGCACACTGGCTGATTACAACATACAGAAGGAATCCACCCTCCATCTGGTCCTCCGCCTGAGAGGTGGGATGCAAATATTTGTGAAGACTCTGACTGGCAAAACAATCACTCTTGAGGTTGAGAGTTCTGATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGCCGGACACTTGCTGACTACAATATTCAGAAGGAATCCACCCTACATCTGGTCCTTCGGTTGAGGGGTGGGATGCAGATATTTGTTAAGACCCTAACAGGGAAAACCATCACACTTGAGGTAGAAAGTTCTGACACTATTGACAATGTCAAGACTAAGATACAGGACAAGGAGGGGATCCCACCTGATCAGCAGAGGCTTATCTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCTTAGCTGATTACAACATTCAGAAGGAGTCAACCCTTCATCTTGTCCTGCGACTCCGTGGAGGCATGCAAATCTTTGTAAAAACACTGACTGGAAAGACTATCACGCTCGAAGTGGAGAGCTCAGATACTATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAGCAGAGGCTCATCTTTGCTGGGAAGCAACTTGAAGATGGCAGAACTCTAGCTGATTACAACATTCAGAAGGAGTCTACCCTCCACTTGGTCCTTCGCCTACGTGGTGGCATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACGATTACCTTGGAGGTGGAGAGCTCGGACACCATAGACAACGTGAAGGCGAAGATACAGGACAAGGAGGGGATTCCTCCAGATCAGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACACTGGCCGATTACAACATTCAAAAAGAGTCTACACTCCACTTGGTCCTCCGCCTCCGAGGTGGCATGCAGATCTTTGTGAAGACTCTCACAGGGAAGACTATCACTCTTGAGGTGGAGAGCTCTGACACCATAGACAATGTGAAGGCCAAAATCCAAGACAAGGAGGGGATCCCCCCGGATCAGCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAAGATGGGCGAACTCTGGCGGATTATAACATTCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTTCGTGGTGGTGCCTGCTGA 1545 0.477 MLDKDTKPFIKVDLIGFYGWYNNLLDVKAVKKEFVAHFVTSILRYFDTSFVFRFVKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAC* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00925 514 CDD Ubl_ubiquitin 361 436 - -
Eupl14g00925 514 ProSitePatterns Ubiquitin domain signature. 83 108 IPR019954 -
Eupl14g00925 514 ProSitePatterns Ubiquitin domain signature. 463 488 IPR019954 -
Eupl14g00925 514 PANTHER UBIQUITIN 285 364 - -
Eupl14g00925 514 FunFam Polyubiquitin 3 133 208 - -
Eupl14g00925 514 SUPERFAMILY Ubiquitin-like 436 513 IPR029071 -
Eupl14g00925 514 FunFam Polyubiquitin 3 361 436 - -
Eupl14g00925 514 FunFam Polyubiquitin 3 437 512 - -
Eupl14g00925 514 CDD Ubl_ubiquitin 57 132 - -
Eupl14g00925 514 ProSitePatterns Ubiquitin domain signature. 311 336 IPR019954 -
Eupl14g00925 514 ProSiteProfiles Ubiquitin domain profile. 57 132 IPR000626 GO:0005515
Eupl14g00925 514 SUPERFAMILY Ubiquitin-like 208 284 IPR029071 -
Eupl14g00925 514 FunFam Polyubiquitin 3 57 132 - -
Eupl14g00925 514 PRINTS Ubiquitin signature 88 108 IPR019956 -
Eupl14g00925 514 PRINTS Ubiquitin signature 109 130 IPR019956 -
Eupl14g00925 514 PRINTS Ubiquitin signature 67 87 IPR019956 -
Eupl14g00925 514 CDD Ubl_ubiquitin 209 284 - -
Eupl14g00925 514 SUPERFAMILY Ubiquitin-like 284 360 IPR029071 -
Eupl14g00925 514 ProSiteProfiles Ubiquitin domain profile. 209 284 IPR000626 GO:0005515
Eupl14g00925 514 ProSiteProfiles Ubiquitin domain profile. 437 512 IPR000626 GO:0005515
Eupl14g00925 514 SUPERFAMILY Ubiquitin-like 49 132 IPR029071 -
Eupl14g00925 514 CDD Ubl_ubiquitin 437 512 - -
Eupl14g00925 514 FunFam Polyubiquitin 3 285 360 - -
Eupl14g00925 514 ProSitePatterns Ubiquitin domain signature. 159 184 IPR019954 -
Eupl14g00925 514 ProSiteProfiles Ubiquitin domain profile. 133 208 IPR000626 GO:0005515
Eupl14g00925 514 ProSiteProfiles Ubiquitin domain profile. 361 436 IPR000626 GO:0005515
Eupl14g00925 514 ProSiteProfiles Ubiquitin domain profile. 285 360 IPR000626 GO:0005515
Eupl14g00925 514 ProSitePatterns Ubiquitin domain signature. 387 412 IPR019954 -
Eupl14g00925 514 FunFam Polyubiquitin 3 209 284 - -
Eupl14g00925 514 SUPERFAMILY Ubiquitin-like 132 208 IPR029071 -
Eupl14g00925 514 Gene3D - 285 360 - -
Eupl14g00925 514 Gene3D - 133 208 - -
Eupl14g00925 514 Gene3D - 436 514 - -
Eupl14g00925 514 Gene3D - 209 284 - -
Eupl14g00925 514 Gene3D - 361 435 - -
Eupl14g00925 514 Gene3D - 53 132 - -
Eupl14g00925 514 SUPERFAMILY Ubiquitin-like 360 436 IPR029071 -
Eupl14g00925 514 CDD Ubl_ubiquitin 133 208 - -
Eupl14g00925 514 Pfam Ubiquitin family 135 206 IPR000626 GO:0005515
Eupl14g00925 514 Pfam Ubiquitin family 363 434 IPR000626 GO:0005515
Eupl14g00925 514 Pfam Ubiquitin family 211 282 IPR000626 GO:0005515
Eupl14g00925 514 Pfam Ubiquitin family 59 130 IPR000626 GO:0005515
Eupl14g00925 514 Pfam Ubiquitin family 439 510 IPR000626 GO:0005515
Eupl14g00925 514 Pfam Ubiquitin family 287 358 IPR000626 GO:0005515
Eupl14g00925 514 CDD Ubl_ubiquitin 285 360 - -
Eupl14g00925 514 ProSitePatterns Ubiquitin domain signature. 235 260 IPR019954 -
Eupl14g00925 514 SMART ubq_7 209 280 IPR000626 GO:0005515
Eupl14g00925 514 SMART ubq_7 285 356 IPR000626 GO:0005515
Eupl14g00925 514 SMART ubq_7 361 432 IPR000626 GO:0005515
Eupl14g00925 514 SMART ubq_7 57 128 IPR000626 GO:0005515
Eupl14g00925 514 SMART ubq_7 437 508 IPR000626 GO:0005515
Eupl14g00925 514 SMART ubq_7 133 204 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00925 Eupl-Chr14 13204365 13212246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00925 437 513 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 100.000 1.93e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00925 K08770 - psom:113290178 881.708