Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00900 ATGGCTCTGAGTTACTTATCTGTCTCGGCGATCTGTACGGTGTTAAGCCTTGTAGGGCTCCAATGGTGGACAGTATTATCACTGGAGAAACTCAAGTCAGACGGCTCGATTGGTGAGAATGTTATTCATTCGGGGAATGCTGGCCATGCAGTAGAGATGCTTCTGGGTTCAAACATCACAATTGCGTTGCTGGCAAATTTTGCACTCAACATATTTTTTCTGGTCATTCTGTGTCTTAAGGCTATATTTTTTGTGCAGCTACAACCATCTGAGACACGAAAAGTGGTGGAACGTCTTATAAACTATGTCGTTTACAAGGGGACATTTCTTCCGTTGGTAGTGCCACCAACAATTTTTCAAGCAACAACATGGTCAACTTGGTTGACAGTTCTTTGTACATTGAAGATGTTTCAAGCATTGGCAAGGGACCGTCTGGAACGGTTGAACGCTTCCCCTTCTGCAACTCCATGGACATACTTTCGTGTTTTTTCAGTCCTATTGTTGGTTCTCTCGATCGATTTCTTCTGGATAAGGGTGTGTATGCTAATATACAGATCTTTAGGGTCAACTATGTTTCTGCTGTTATTCTTCGAGCCTCTCAGTATTGCTTTCGAGACACTGCAGGCCATTATGGTCCATGGATTTCAGCTCCTTGAAATGTGGCACCGTCATTCAGTGGAAAGCAACTCAGATTGCCAAAGATCCCAATTTTTTGATAGAACAACAGCAGGTTCTTTATGGGAATGGAAGGGCATTCTTATTCGGAATGTCGGTTTTTTCCTGGACATAATGACCTTGTTAATGGCACTCGGTCATTACTTGCATATTTGGTGGCTTCATGGCATGGCATTCCATCTTGTGGATGCAGTCCTTTTCCTAAATATACGCGCATTGGCAGGTGCAGTTATAAAGCGTGTTAAAGGATTCATCAAGTTGAGAATTGCTCTAAGTTCCCTTCATGGGGCACTTCCTGATGCGACATCTGAAGAGTTGCAAGCGTATGATGATGAATGTGCAATTTGTAGGGAACCAATGGCTAAGGCTAAAAGGCTTTCCTGTAATCACCTTTTCCATCTTGCGTGCTTGAGGTCTTGGTTGGATCAAGGTCTAAGTGAGATGTATTCTTGCCCAACTTGTCGAAGACCACTTTTTGTGGGTAGAACTGAAGATATTACTTACTCCCACGCTGGAGAAATCTTGAATGATGAGCAACTTGCCCATCAAATTAGTTCTGGATTGGACCGGCAAAACACACCTGGGCATGGCCTGCCTATAGGGACATCTCCTAACCAGCCACAGACCCCTTTTGAAAGCATTCCATGGAGGTTCAGTTCCTTGCTTCTATCGTGTCTTGTAGTTTCTGTGTTTTACTACTGTTACGAGCAATGGTTTCTCTGCAGAGGAGTGGGTCTGGATTCAACTTGGGCGCATCCTTTGCCAAGCCAAGGTCTTGATGGTGCTGGTCCATCTACCGCAATTAGATCAGTTGGGTTGGGCAGAGTACAGATGATGATGCGGCATCTTGCATCTGTGGGTGAAACTTATGCCCAGACAGCTCTTGAAGATGCCTCGTGGAGCCTTTGGTCTACGACACACCCTCAGGCTGCCTCCGGTTCCTCAATTCCTCCTGCAGCAGCAGCAGCTGCTGCTGCTGTAAGATACACTGGAAACACTGGCGGTTTACGTTTCAGGAACCCCTCGCCCTCTGTAAATGATAACATATCAAGTATACTTGCCATGGCAGACACGGTACGGGAGGTGCTGCCCCACATTCCCGACGAAATAATTTTTCAGGACTTACAGCAAACAAACAACGTTGCTGTTACTGTGAATAATCTTCTCCAAATGTGA 1851 0.4522 MALSYLSVSAICTVLSLVGLQWWTVLSLEKLKSDGSIGENVIHSGNAGHAVEMLLGSNITIALLANFALNIFFLVILCLKAIFFVQLQPSETRKVVERLINYVVYKGTFLPLVVPPTIFQATTWSTWLTVLCTLKMFQALARDRLERLNASPSATPWTYFRVFSVLLLVLSIDFFWIRVCMLIYRSLGSTMFLLLFFEPLSIAFETLQAIMVHGFQLLEMWHRHSVESNSDCQRSQFFDRTTAGSLWEWKGILIRNVGFFLDIMTLLMALGHYLHIWWLHGMAFHLVDAVLFLNIRALAGAVIKRVKGFIKLRIALSSLHGALPDATSEELQAYDDECAICREPMAKAKRLSCNHLFHLACLRSWLDQGLSEMYSCPTCRRPLFVGRTEDITYSHAGEILNDEQLAHQISSGLDRQNTPGHGLPIGTSPNQPQTPFESIPWRFSSLLLSCLVVSVFYYCYEQWFLCRGVGLDSTWAHPLPSQGLDGAGPSTAIRSVGLGRVQMMMRHLASVGETYAQTALEDASWSLWSTTHPQAASGSSIPPAAAAAAAAVRYTGNTGGLRFRNPSPSVNDNISSILAMADTVREVLPHIPDEIIFQDLQQTNNVAVTVNNLLQM* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00900 616 SMART ring_2 338 379 IPR001841 -
Eupl14g00900 616 FunFam E3 ubiquitin protein ligase RIN2 575 615 - -
Eupl14g00900 616 Pfam Ring finger domain 336 380 IPR001841 -
Eupl14g00900 616 Gene3D - 575 615 - -
Eupl14g00900 616 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Eupl14g00900 616 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Eupl14g00900 616 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 3 616 - -
Eupl14g00900 616 Pfam CUE domain 580 616 IPR003892 GO:0043130
Eupl14g00900 616 SUPERFAMILY RING/U-box 325 385 - -
Eupl14g00900 616 ProSiteProfiles CUE domain profile. 576 616 IPR003892 GO:0043130
Eupl14g00900 616 MobiDBLite consensus disorder prediction 412 432 - -
Eupl14g00900 616 CDD RING-H2_AMFR 336 383 - -
Eupl14g00900 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 389 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00900 Eupl-Chr14 12699485 12716868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00900 57 380 C3H Transcription Factor Family AT3G16090 29.305 5.41e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00900 K10636 - nnu:104598546 917.146