Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00647 ATGGCTTCTTCCCCCCGGTCATGGAACCTCTGCTTCTTCATGTTGTGCTGGATGTGGATGATGGCCATCCGATCAACAGTTGCAAAACCCATTCCGACCCCGCAAAGCATCGCTCGTTTCCGGCCGAGGGCATGGACCCTTGCCCACGCCACCTTCTACGGCGACGAGACTGCATCAGAAACCATGGGAGGAGCTTGTGGGTATGGAAACTTATTTACTAGCGGTTACGGGACCGATACCGCAGCTTTGAGCTCGACATTGTTTAACAATGGATATGCTTGTGGAACTTGTTACCAAATCAAGTGTGTTCAATCGACTGCATGCTACCCAGGCTCCCCATTCACCACTGTGACTGCTACAAATATTTGCCCGCCCAATTGGTCCAAGGACTCCAATGCCGGTGGCTGGTGCAACCCACCTAGGACACATTTCGACATGTCTAAGCCTGCGTTCATGAAAATTGCGCGATGGAAAGCTGGCATTGTGCCCGTCATGTACCGCAGAGTGCCATGTACTAAGAGTGGAGGACTTAAATTCTCATTCCAAGGGAATGGGTACTGGTTATTAGTGTACGTGATGAATGTGGGAGGAGGAGGAGACATAGCGAACATGTGGGTGAAAGGAAGCAAAACTGGATGGATAAGCATGAGTCATAACTGGGGAGCATCTTACCAGGCATTTGCAACTCTAGGAGGCCAATCTCTTTCCTTCAGGCTCACTTCTTACACAACAAAGGAGACTATCATAGCATGGAATGTCGCCCCTTCGACCTGGAATATCGAGATATTGACAACACTGGGACATTTACTACACGACTCGAACCATGACCTGCCACAAAAGAAAGGAGAAAAAGCTGTTCATGTGTTTCTTACAGAAGAGAAGGAGAAGAAGCAACAGTGCAGTACTACTAACTCCTTTAAAATCCAGCTCTCACTTTCTCACATGGGCTCTTACCTCTCCCTCATTCTGGGGATTAATGTAGTGATATTATTCGTATGGCCATCGAAGAACTTCGTCGATGCTCAAGGAACTGAAGCTTCTCGTCGTCTCGATCATGTCCTCGGCGACTACGCTTTCCAGTCCTACACCAAACAACATAAGACTGGTGTACTATACAAGATACGTCTACCGGCAAATCTAACGGGTGTTCGAGCTGATACTGTGAGGTTCAGATGTGGCAGTCTTCGACGATACGGTGCACATGTTAAAGAATTCCGTTTGGCAATGGGTGTTACTGTGCAGCCTTGTGTGGAAAGAGTAGTAGTGGTTCGGCAGAGCTTGGGAGAGAATTGGTCTTCTATCTATTATGATAATTACAATTTTTCTGGTTATCAGCTTGTTTCTCCTGTTTTAGGCCTTCTCGCATACGATGCCACCGATCTTAAGTCTACCAACCGATCGGAGCTCGGATTTTTGCTGGAAAGAAACCCATTAAAATTGATTTCTCCAACGTTACGAGGATCGACACTCCTGGCATTAGGCCTTTATGTGCTAGTATCGTCGAACATTTGCGTCGCAGCTCGACATGGTCATTTTGGTTTGGTGATTGAGTCATCTTTATCACAGCCCCGGACTAAGGTGAGTCGATGGAAGATCATAATGGGGAGTTTAGTTGGAGGTGCCTTGGGTGCTTTCCTGTTAGGCTTGCTCTTTGTTGCATTGCTTGTTAAGGCAAAGAAGAGATCACAAATGGTCGAGATGGAGCGGAGAGCTTACGAAGAGGAAGCGTTGCAGATGTCGATGGTCGGACATAAGAAAGGGAAAGAACAGAGAATTCAACAAATAGCAGCCAATGCTGGTAATACTGCTCGATGA 1815 0.4716 MASSPRSWNLCFFMLCWMWMMAIRSTVAKPIPTPQSIARFRPRAWTLAHATFYGDETASETMGGACGYGNLFTSGYGTDTAALSSTLFNNGYACGTCYQIKCVQSTACYPGSPFTTVTATNICPPNWSKDSNAGGWCNPPRTHFDMSKPAFMKIARWKAGIVPVMYRRVPCTKSGGLKFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSKTGWISMSHNWGASYQAFATLGGQSLSFRLTSYTTKETIIAWNVAPSTWNIEILTTLGHLLHDSNHDLPQKKGEKAVHVFLTEEKEKKQQCSTTNSFKIQLSLSHMGSYLSLILGINVVILFVWPSKNFVDAQGTEASRRLDHVLGDYAFQSYTKQHKTGVLYKIRLPANLTGVRADTVRFRCGSLRRYGAHVKEFRLAMGVTVQPCVERVVVVRQSLGENWSSIYYDNYNFSGYQLVSPVLGLLAYDATDLKSTNRSELGFLLERNPLKLISPTLRGSTLLALGLYVLVSSNICVAARHGHFGLVIESSLSQPRTKVSRWKIIMGSLVGGALGAFLLGLLFVALLVKAKKRSQMVEMERRAYEEEALQMSMVGHKKGKEQRIQQIAANAGNTAR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00647 604 CDD DPBB_EXPA_N 45 171 - -
Eupl14g00647 604 Pfam Lytic transglycolase 80 166 IPR009009 -
Eupl14g00647 604 Pfam Expansin C-terminal domain 178 255 IPR007117 -
Eupl14g00647 604 SUPERFAMILY Barwin-like endoglucanases 44 194 IPR036908 -
Eupl14g00647 604 Gene3D - 177 267 IPR036749 -
Eupl14g00647 604 SUPERFAMILY PHL pollen allergen 173 260 IPR036749 -
Eupl14g00647 604 SMART dpbb_1 80 166 IPR007112 -
Eupl14g00647 604 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 176 IPR007112 -
Eupl14g00647 604 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Eupl14g00647 604 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Eupl14g00647 604 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Eupl14g00647 604 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Eupl14g00647 604 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Eupl14g00647 604 PRINTS Expansin signature 175 187 IPR002963 GO:0009664
Eupl14g00647 604 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Eupl14g00647 604 PRINTS Expansin signature 115 125 IPR002963 GO:0009664
Eupl14g00647 604 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Eupl14g00647 604 PRINTS Expansin signature 151 164 IPR002963 GO:0009664
Eupl14g00647 604 PRINTS Expansin signature 134 151 IPR002963 GO:0009664
Eupl14g00647 604 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Eupl14g00647 604 PANTHER EXPANSIN-A15 20 261 IPR002963 GO:0009664
Eupl14g00647 604 Coils Coil 555 575 - -
Eupl14g00647 604 Gene3D - 29 172 IPR036908 -
Eupl14g00647 604 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 259 IPR007117 -
Eupl14g00647 604 Pfam Protein of unknown function (DUF1191) 345 517 IPR010605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00647 Eupl-Chr14 8494044 8501047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00647 40 259 Expansin Gene Family AT1G12560 74.091 2.32e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00647 - - pper:18775938 444.121