Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00640 ATGGTGAGGGGGAAGACCCAGATGAGGCGGATAGAGAACGCCACGAGCAGGCAAGTCACCTTCTCAAAGCGTCGAAATGGGTTGCTTAAGAAGGCTTTTGAACTATCGGTTCTCTGCGATGCTGAACTTGCCCTTATCGTCTTCTCCCCAAGAGGGAAGCTCTATGAGTTCTCAAGTTCCTGCATGCACAAGACGATAGAACGCTATCAAAGGTATGCAAAAGACTTCCAAATCAGCCACAAAGCAGTTGAACAAAATATGCAGCATTTGAAATTCGAAGCTGCGAACATGGCGAAGAACATCGAGTTTCTTGAAGTTGCTAAACGGAAGCTCTTGGGAGAAGGTTTGGGATCATCTTCAATTGAGGAACTACAACAGGTGGAGAACCAGTTAGAGCGAAGCCTAAGCAACATCAGAGCGAAGAAGACTCAATTATTTAAAGAGAAGATTGAGCAACTACAACAAAAGGAGAAAATCCTATTGGAGGAAAATGCAAAGTTAAGTGACAAGTGTGGGGTGCAACCAAAGCAAGCTCAACAGAAGGAAATTGTGCTTTACAGTCAAAATAGTCCAAATTCTGAGTGTGGGGTGCAACAAAATCAAGTCTCACCTCAGCAAAAGGAACTTGTGCCATACAGTCAAAGTAGTCCGGATTCGGAGGTGGAGACAGAATTGTTCATCGGAAGGCCGGAAAGGGGAAGTAGTCGCTACCCATTTGCAAGGTTCACGATCGGTGATGAAAAAGTGTACACGACACAAATCGACATCGAGGAAAGGCATTGA 783 0.4496 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIVFSPRGKLYEFSSSCMHKTIERYQRYAKDFQISHKAVEQNMQHLKFEAANMAKNIEFLEVAKRKLLGEGLGSSSIEELQQVENQLERSLSNIRAKKTQLFKEKIEQLQQKEKILLEENAKLSDKCGVQPKQAQQKEIVLYSQNSPNSECGVQQNQVSPQQKELVPYSQSSPDSEVETELFIGRPERGSSRYPFARFTIGDEKVYTTQIDIEERH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00640 260 FunFam MADS-box protein SOC1 14 95 - -
Eupl14g00640 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Eupl14g00640 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 MobiDBLite consensus disorder prediction 194 221 - -
Eupl14g00640 260 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Eupl14g00640 260 MobiDBLite consensus disorder prediction 194 228 - -
Eupl14g00640 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl14g00640 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Eupl14g00640 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl14g00640 260 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl14g00640 260 Coils Coil 121 170 - -
Eupl14g00640 260 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00640 Eupl-Chr14 8315963 8384300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00640 1 158 MADS-box Gene Family AT2G45660 74.843 6.18e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl14g00640 K-box 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00640 - - nnu:104596218 283.493