Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00603 ATGGATGATGAGGTAGCTGTTGAAGTTGAATCAAGTAATACGAAGACCTTTCCTGCTGGTCTTCGTGTTTTGGTTGTTGATGATGATCCTACATGTCTTAAGATTGTTGAAACAATGCTTAAAGCAAGCGATTATGAAGTTGTTGCTGTTGGAGAAGCAATTGATGCTTTGTCCATGTTGAAGGAGACGGAAGGTGGATTCGACCTAGTTATAACTGATGTTCATATGCCTAACATGGATGGATTTGAGCTTCTCAGCCACATTAGGAAAGAATTCGAGCTTCCTGTCATTATGATATCTTTTGATGACAAAGTGAAGGTTGTGACCAAAGGACTAGAATGTGGGGCTTCTTTTTACCTCTTGAAGCCTGTAACCATGAATGATATTCAAAACCTTTGGCAATATGTGGTAAAAAAGAAGAGAGATGATATGTTGAAAATTGAGAAGACGGGCAGTGTTCAAGAGGGTTTGTCGTTTGGTAAGGTATTGGAAGAAGATATTGATTGTGCATCTTCAGTCAATGAAGATAATTGTAAGCAACAAGACTACAAAAGGAAGGCACTCAAAGAGAATGACGAAGAAGATGAGGAAGATAATGCTTCTAATATTGCACGAAAGAAAGCAAGGGTGATTTGGAATACTGAACTTCACAACCAGTTCCTGGAAGCCATAAATCAATTAGGCCTTGATAAGGCTATTCCAAAAAAGATACTTGAGGTGATGAACATCCGAGGATTAACTAGAGAAAATGTTGCCAGCCATTTGCAGAAATATCGCCTCTTCTTGAAGCGGGTTAAGGGAGCAAGCCAATCTCTTGAACCTGGTACAACAAGGACCTTGAACAATGGGGCTCTTAAATCAAGCAACTGTGCATCGGGTCCTCCTGCATTAACATTCAATTTAGAACAAGGATATCCACAATTCTTGGAGCAGCAGCGTCAAGGAAGTGTATTACGACCGGGATTCGGATGTAACTCTCGCGAATTTAATGCTCCTATTCGCACGCTGCATGTTGGTCCTACACACTTTCTTAATCAGGAAGCATCAGGTAGCAACTCTATGGCTCAATTAAGATATGGAGAATCACTTCCAATGAGCAATCAGAAAAATCACCTGCAGCGACCATTTCTTGTCAATGCATCATCTTTTAATCAATACAATGGTGCCAACTACTCAGTTTTTGGAACGGAGCCGCATGGAATTAGAATGGGTGCATCAATACGCGGTGATGGTTCAACTGTGCGAGGTAGCAATAATACAATGCAGATGGTCCATCAACAACCTCAGGGGAGACTGGGACTTTCTGGCAATGATCCACTTGAACATAACTTCGGCACATGGAGCACTCAAGGCCAAAACAATCTTCCAATTGTCGGAAACATGGGATCATTTGGAAATTTTAACCAAGCCCCTTATTTCCATTCTACTGATAACAACCATACTGGAAATCTGATTACTAATACCGGAGGGCTGTTCGGACCAAGTCAGAACAACATAACAACAACACCACCGCCACTGCCACCACCACCACTAGAACAACATCAACAGCAACAAAATTATGTTGGGGATGGAGGAGGGGAAATTGATAATTTTTATGATCTGTTAAGGAGCAGCTCGACTGGTGAGCACCGATCGTTTTCCCAACCATTCGATGAAGGCGATCTTGGTCTAATTTTCAAGCAAACCGACCAATCCGCTGATCAGGAACAATGTGGTGAAGAATTCATGGACTCCATCTTCGATATCAACGCATGTTAG 1758 0.4175 MDDEVAVEVESSNTKTFPAGLRVLVVDDDPTCLKIVETMLKASDYEVVAVGEAIDALSMLKETEGGFDLVITDVHMPNMDGFELLSHIRKEFELPVIMISFDDKVKVVTKGLECGASFYLLKPVTMNDIQNLWQYVVKKKRDDMLKIEKTGSVQEGLSFGKVLEEDIDCASSVNEDNCKQQDYKRKALKENDEEDEEDNASNIARKKARVIWNTELHNQFLEAINQLGLDKAIPKKILEVMNIRGLTRENVASHLQKYRLFLKRVKGASQSLEPGTTRTLNNGALKSSNCASGPPALTFNLEQGYPQFLEQQRQGSVLRPGFGCNSREFNAPIRTLHVGPTHFLNQEASGSNSMAQLRYGESLPMSNQKNHLQRPFLVNASSFNQYNGANYSVFGTEPHGIRMGASIRGDGSTVRGSNNTMQMVHQQPQGRLGLSGNDPLEHNFGTWSTQGQNNLPIVGNMGSFGNFNQAPYFHSTDNNHTGNLITNTGGLFGPSQNNITTTPPPLPPPPLEQHQQQQNYVGDGGGEIDNFYDLLRSSSTGEHRSFSQPFDEGDLGLIFKQTDQSADQEQCGEEFMDSIFDINAC* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00603 585 Pfam Myb-like DNA-binding domain 212 259 IPR001005 -
Eupl14g00603 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 364 IPR045279 GO:0009736
Eupl14g00603 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 263 IPR017930 -
Eupl14g00603 585 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 261 IPR006447 GO:0003677
Eupl14g00603 585 Gene3D - 203 266 - -
Eupl14g00603 585 MobiDBLite consensus disorder prediction 497 517 - -
Eupl14g00603 585 CDD REC_typeB_ARR-like 23 137 - -
Eupl14g00603 585 SUPERFAMILY CheY-like 20 140 IPR011006 -
Eupl14g00603 585 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Eupl14g00603 585 SMART REC_2 21 133 IPR001789 GO:0000160
Eupl14g00603 585 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Eupl14g00603 585 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Eupl14g00603 585 Gene3D - 21 151 - -
Eupl14g00603 585 FunFam Two-component response regulator 203 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00603 Eupl-Chr14 7521780 7526563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00603 56 294 Response Regulator Gene Family AT3G16857 46.667 1.22e-66 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Eupl14g00603 Response_reg 1.6e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00603 - K14491 nnu:104596289 385.571