Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00580 ATGTCGGATATCCGTAAGTGGTTTATGAAACAACATGACAAGAACAATGGGACAGCATTGAAGCCTGCAAAACCCACTGCGACTGTTCCGCCCCACGAGAAGCCTTCTCCAGCGACCTCACAACCAGAGAAACCCATACATGGAGGTCAAGAAAGTTCAGGAAGGAGAAAAAGTAGCAAATATTTTGCTAATGATGCACAAAAGTCGAAAGATGAAAAGGAGACAGAGAAAACCCCAGCTAAAAGAAAAATCCAAAAAAGTAGGGAGGAAATACACGATGATGTGAAACCCCCTTTAGCAAAGAAGCTTCACAAGGGTGATGATGATGATGATGATTTTGTGTTGCCCAGTTTAAGAAAAAACTCTGCTGAGGTCACTCCCACCAAGAAATTGAAGGGTGGGTTGGGTAAAGGAATTGTACAAAAATCTGTAGATACCAATGAAAAGGATGATGACAGTGTCGATGATAAAGAGGCTAGAACCCCTCTTAAAGCTGGTGGAAGGAGTGGTGGGGGAAGAGGTGGTGGGGGAAGAGGTTCAGCAGTCGCACCAGCTGGTGGAAGAGGGAGAGGTGGATTCATGTTTGGTGAAAGGAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCCGAGGGTGCTCCTGATTGTTTAGCTAGTCTGACTTTTGTGATTAGTGGAACTCTTGACAGTTTGGAAAGGGAAGAAGCTGAAGATTTGATTAAACGCCACGGTGGTCGAGTTACTGGATCCGTCAGCAAGAAAACAAATTATCTTCTAGCTGATGAAGATATTGGAGGACGGAAATCCGAAAAAGCCAAAGAGCTGGGCACTGCCACGCTGACTGAGGACGGATTGTTTGATATGATCCGTAAATCAAAACCTACAAAAGAACCTCCACAAGAAGAATCAAAGAAGAAAATTGTGGATAAGGTTATTGCATCGCAGCCAAAAGGAAGTCCTCTGAAAATAGAAGTGAAGGATGATCGAGTGGGCAAAACTTTGGTAAAATATGCTCCAAAAGGTTTGGCCTCAAGTGCCTCTCCTGCTAAGTGCAAAGACCAAACTACACGCCAGGGTTCATTGACATGGACAGAAAAATACAAACCGAAGGTTCCAAACGACATCATTGGCAATCAGTCACTTATTAAGCAACTTCATGACTGGTTGGTGCATTGGAATGAACAATTTCTACATACCAGTCAGAGGGGAAAGGGCAAAAAGCAGAACGATAATGGAGCTAAAAAGGCTGTACTGTTAAGTGGGTCACCTGGTATTGGGAAGAGTACGTCAGCAAAGTTAGTTAGCCAGATGCTTGGGTTTCAAGCCATAGAGGTAAATGCTAGTGATAATCGTGGAAAAGCTGATGCCAAAATTTTTAAAGGAATTGGTGGAAGCATGGCAAATTCTGTAAAAGAACTTGTCAGCAACGAAGCTCTGAGTGTTAATATGGATCGGTCAAATCATCCAAAAGCTGTGTTGATTATGGATGAGGTTGATGGCATGTCTGCTGGAGATAGAGGTGGAGTGGCTGACCTTATTGCTAGCATCAAGATCTCCAAAATTCCTATCATTTGTATTTGCAACGACCGCTACAGTCAGAAACTGAAAAGTCTCATCAACTATTGTTTGCTTCTCACCTTCCGGAAACCTACTAAACAACAGATGGCAAAGAGGTTAATGCAAGTTGCAAAAGCAGAAGGCCTTCAAGTTAATGAGATTGCGCTCGAGGAACTTGCAGAGAGAGTTAATGGAGATGTGCGTATGGCAATAAATCAGTTGCAGTATATGAGCCTCTCAATGTCAATTATCAACTATGATGACATAAGACAACGCCTTCTTACTAGTGCAAAGGATGAAGATATTTCACCTTTTACAGCTGTTGATAAGCTATTTGGTTTTAATGGAGGGAAGTTGCGAATGGATGAGAGGATTGACTTGAGCATGAGTGACCCTGATCTAGTTCCTCTTCTTATTCAGGAAAATTACCTCAACTATCGACCAAATTCTGCTGGTAAGGATGACAATGGAATCAAAAGAATGAACACGATTGCCCGTGCTGCAGAGTCTATTGGAAATGGAGATATCATCAATGTACAGATTCGGAGATATCGACAATGGCAACTCTCCCAAACCAGTGCCCTTGCATCTTGTATAATTCCTGCCGCTTTGTTGCATGGGCAAAGGGAGATCCTTGAACAGGGAGAGCGTAATTTTAATAGATTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGCAAGAATTTGAGGCTTTTGGAGGATATGCATGTACATCTGCTTGCTTCTCGTGAATCCAATTCAGACAGGGAGTCCTTGCGAGTTGATTATTTCTCTCTTATTCTGAAACGATTAACTGATCCACTTCGGGTGCTACCCAAGGTTGGTCTGATCTCATTCAAGATTATATAA 2427 0.4281 MSDIRKWFMKQHDKNNGTALKPAKPTATVPPHEKPSPATSQPEKPIHGGQESSGRRKSSKYFANDAQKSKDEKETEKTPAKRKIQKSREEIHDDVKPPLAKKLHKGDDDDDDFVLPSLRKNSAEVTPTKKLKGGLGKGIVQKSVDTNEKDDDSVDDKEARTPLKAGGRSGGGRGGGGRGSAVAPAGGRGRGGFMFGERKDPPHKGEKEVPEGAPDCLASLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLADEDIGGRKSEKAKELGTATLTEDGLFDMIRKSKPTKEPPQEESKKKIVDKVIASQPKGSPLKIEVKDDRVGKTLVKYAPKGLASSASPAKCKDQTTRQGSLTWTEKYKPKVPNDIIGNQSLIKQLHDWLVHWNEQFLHTSQRGKGKKQNDNGAKKAVLLSGSPGIGKSTSAKLVSQMLGFQAIEVNASDNRGKADAKIFKGIGGSMANSVKELVSNEALSVNMDRSNHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLINYCLLLTFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDVRMAINQLQYMSLSMSIINYDDIRQRLLTSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPNSAGKDDNGIKRMNTIARAAESIGNGDIINVQIRRYRQWQLSQTSALASCIIPAALLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLEDMHVHLLASRESNSDRESLRVDYFSLILKRLTDPLRVLPKVGLISFKII* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00580 808 FunFam Replication factor C subunit 1 622 731 - -
Eupl14g00580 808 CDD BRCT_RFC1 212 290 - -
Eupl14g00580 808 Pfam ATPase family associated with various cellular activities (AAA) 417 528 IPR003959 GO:0005524|GO:0016887
Eupl14g00580 808 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 11 797 - -
Eupl14g00580 808 MobiDBLite consensus disorder prediction 193 211 - -
Eupl14g00580 808 FunFam Replication factor C subunit 1 550 621 - -
Eupl14g00580 808 Gene3D - 361 549 IPR027417 -
Eupl14g00580 808 Pfam BRCA1 C Terminus (BRCT) domain 215 289 IPR001357 -
Eupl14g00580 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 610 IPR027417 -
Eupl14g00580 808 PIRSF RFC1 183 802 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Eupl14g00580 808 PIRSF RFC1 1 187 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Eupl14g00580 808 SUPERFAMILY BRCT domain 212 296 IPR036420 -
Eupl14g00580 808 FunFam Replication factor C subunit 1 190 291 - -
Eupl14g00580 808 Pfam Replication factor RFC1 C terminal domain 690 796 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Eupl14g00580 808 FunFam Replication factor C subunit 1 361 549 - -
Eupl14g00580 808 SUPERFAMILY post-AAA+ oligomerization domain-like 621 766 IPR008921 GO:0003677|GO:0006260
Eupl14g00580 808 Gene3D - 550 620 - -
Eupl14g00580 808 CDD AAA 410 513 - -
Eupl14g00580 808 SMART AAA_5 413 551 IPR003593 GO:0016887
Eupl14g00580 808 MobiDBLite consensus disorder prediction 143 163 - -
Eupl14g00580 808 MobiDBLite consensus disorder prediction 1 213 - -
Eupl14g00580 808 CDD HLD_clamp_RFC 550 608 - -
Eupl14g00580 808 Gene3D - 622 731 - -
Eupl14g00580 808 ProSiteProfiles BRCT domain profile. 212 293 IPR001357 -
Eupl14g00580 808 Gene3D BRCT domain 194 292 IPR036420 -
Eupl14g00580 808 SMART BRCT_7 214 292 IPR001357 -
Eupl14g00580 808 MobiDBLite consensus disorder prediction 61 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00580 Eupl-Chr14 7151834 7175595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00580 1 804 Core DNA Replication Machinery Family AT5G22010 67.778 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00580 K10754 - nnu:104590928 1178.7