Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl14g00558 | ATGGCTTCTTCATCTTCTACATCAAGCAGTGGCTACGAAATCCCATGGGTGGAGAAGTATAGACCCACCAAAGTGTCGGACGTTGTGGGGAACGAAGACGCCGTTTCAAGGCTTCAAGTCATCGCTAGGGATGGAAACATGCCCAATCTCATCTTAGCTGGTCCTCCTGGAACTGGAAAAACTACAAGTATACTGGCCCTTGCACACGAGCTCTTGGGAGCAAATTCTAAGGAGGCTGTTTTAGAGCTAAATGCATCAGATGACAGGGGAATTGATGTTGTGAGGAACAAAATTAAGATGTTTGCTCAAAAGAAAGTAACATTGCCACCAGGGCGGCATAAGATCATAATTCTGGACGAAGCTGACAGCATGACATCAGGAGCACAACAAGCTTTGAGGCGAACAATGGAGATTTACTCAAATTCCACACGTTTTGCTCTTGCATGCAACACTTCTTCTAAAATCATTGAACCCATTCAGAGCAGATGTGCCCTTGTTCGTTTTTCAAGATTGTCGGACCAGGAGATCCTCAGTCGTCTTATGATTGTGGTCCAAGCCGAGAAGGTTCCCTATGTGCCCGAAGGTCTTGAAGCTATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAACTTGCAAGCTACATATAGCGGGTTCCGGTTTGTCAATCAAGAGAATGTATTCAAGGTCTGCGACCAGCCCCATCCTTTACACGTGAAGAATATGGTCCGCAATGTACTTGAGGGGAAATTTGATGATGCCTGTTCTGGTTTGAAGCAGCTCTATGATTTGGGTTATTCACCCACTGACATAATCACAACCCTTTTCCGAATAATAAAAAACTACGATATGGCTGAGTATCTGAAATTGGAATTCTTGAAGGAGACTGGATTTGCCCACATGAGAATCTGTGATGGAGTTGGCTCGCTACTACAACTATGTGGTCTCTTGGCTAAGCTTTCTCTAGTACGAGAAACAGCTAAAGCCGTGTAG | 999 | 0.4474 | MASSSSTSSSGYEIPWVEKYRPTKVSDVVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGANSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILSRLMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFLKETGFAHMRICDGVGSLLQLCGLLAKLSLVRETAKAV* | 333 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl14g00558 | 332 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 14 | 316 | - | - | |
Eupl14g00558 | 332 | Pfam | Replication factor C C-terminal domain | 236 | 321 | IPR013748 | - | |
Eupl14g00558 | 332 | Gene3D | - | 172 | 235 | - | - | |
Eupl14g00558 | 332 | CDD | HLD_clamp_RFC | 171 | 233 | - | - | |
Eupl14g00558 | 332 | Gene3D | - | 236 | 328 | - | - | |
Eupl14g00558 | 332 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 235 | 326 | IPR008921 | GO:0003677|GO:0006260 | |
Eupl14g00558 | 332 | Pfam | ATPase family associated with various cellular activities (AAA) | 50 | 167 | IPR003959 | GO:0005524|GO:0016887 | |
Eupl14g00558 | 332 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 234 | IPR027417 | - | |
Eupl14g00558 | 332 | SMART | AAA_5 | 46 | 172 | IPR003593 | GO:0016887 | |
Eupl14g00558 | 332 | CDD | AAA | 29 | 163 | - | - | |
Eupl14g00558 | 332 | FunFam | Replication factor C subunit 4 | 172 | 235 | - | - | |
Eupl14g00558 | 332 | FunFam | replication factor C subunit 2 | 236 | 328 | - | - | |
Eupl14g00558 | 332 | Gene3D | - | 9 | 171 | IPR027417 | - | |
Eupl14g00558 | 332 | FunFam | Replication factor C subunit 4 | 8 | 171 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl14g00558 | Eupl-Chr14 | 6830848 | 6837630 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl14g00558 | 11 | 331 | Core DNA Replication Machinery Family | AT1G63160 | 91.900 | 0.0 | 624 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl14g00558 | K10755 | - | nnu:104612731 | 625.165 |