Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00557 ATGGAACGGTCAAGGATGGAGTCGACCAGGCCTTCGAATTCACCCGTCGGTGATATTGTAGACTCGACCCCTTTGCTAGGGAACTCAAATGGAAACCGAGACGATGATCGGAGTCGTAGATTCAGTCGGAGGCCGAGTTTACGTGGTGCCGCTCGGTTTATTCGGAGAGCGAGCAACCGTGGAATGAGGGAGCCGTCGATGCTGGTAAGAGAAACGGCAGCAGAGCAATTGGAAGAGCGCCAGAGCGATTGGGCGTATTCGAGACCGGTTGTTGTTCTGGATATCATTTGGAATTTGGCGTTTGTGATTGTTGCGATTTCGGTTCTGATTTTGAGCAGGAACGAATCACCATCGGTGCCGTTGAGGCTGTGGATTGTGGGGTACATTCTGCAATGCATCCTGCACATAGTCTTCGTGTGCCTTGAGTATAGACGGCGCCACCTGCCGCAGCGGTCGACACTGTCAGAGAATCATGGAAGCGGAAGTAGTGGGAATTTGAGTTCGAACATTTGGGAGGAGTCAAGTGACTCTGGTGAGTACCCTGTTGAGCCACAGCAGGATGAGGAGGGTTCCAGTGTTGCAAAGCATCTGGAGTCTGCAAATACAATGTTTTCATTCGTATGGTGGATCATTGGATTCTATTGGGTATCTGTTGGGGGCCAAGCATTGACTCGTGATTCGCCTCAGCTTTACTGGCTTTCTATAGTTTTTCTGGCGTTTGATGTCTTCTTTGTCGTTTTCTGTGTTGCCCTGGCATGTGTCATTGGCATTGCTGTTTGCTGCTGTCTTCCATGTATTATTGCAATCTTATATGCTGTAGCAGAGCAGGAAGGAGCATCCAAGGAGGACATCGACCAACTGCCAAAATACAAATTTCGGAGGATTGGTGATTTTGAGAAACAAAATGGTGAGATACAAGGACCTTTTGGAGGAATAATGACCGAGTGTGACACTGATTCACCCATTGAACGTGTTCTTCCGCTGGAGGATGCTGAATGCTGCATTTGTCTTTCTGCCTATGGTGATGAAGCTGAGCTGCGTGAGCTTCCTTGTGGTCACCATTTTCACTGTGCTTGCATAGACAAGTGGTTGCACATAAATGCTACCTGTCCACTCTGCAAATACAACATCATAAAGAATGGCAGCCACGGTGGGGAGGAAGCATAG 1167 0.4859 MERSRMESTRPSNSPVGDIVDSTPLLGNSNGNRDDDRSRRFSRRPSLRGAARFIRRASNRGMREPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNLAFVIVAISVLILSRNESPSVPLRLWIVGYILQCILHIVFVCLEYRRRHLPQRSTLSENHGSGSSGNLSSNIWEESSDSGEYPVEPQQDEEGSSVAKHLESANTMFSFVWWIIGFYWVSVGGQALTRDSPQLYWLSIVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVAEQEGASKEDIDQLPKYKFRRIGDFEKQNGEIQGPFGGIMTECDTDSPIERVLPLEDAECCICLSAYGDEAELRELPCGHHFHCACIDKWLHINATCPLCKYNIIKNGSHGGEEA* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00557 388 SMART ring_2 333 373 IPR001841 -
Eupl14g00557 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 385 IPR013083 -
Eupl14g00557 388 Pfam Ring finger domain 332 374 IPR001841 -
Eupl14g00557 388 PANTHER TARGET OF ERK KINASE MPK-1 52 377 - -
Eupl14g00557 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Eupl14g00557 388 MobiDBLite consensus disorder prediction 8 31 - -
Eupl14g00557 388 MobiDBLite consensus disorder prediction 1 44 - -
Eupl14g00557 388 CDD RING-H2_PA-TM-RING 332 374 - -
Eupl14g00557 388 FunFam E3 ubiquitin-protein ligase At1g12760 319 384 - -
Eupl14g00557 388 SUPERFAMILY RING/U-box 323 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00557 Eupl-Chr14 6822950 6830792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00557 22 383 C3H Transcription Factor Family AT1G68070 50.681 2.81e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00557 - - tss:122638698 573.163