Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00530 ATGGGGGTGAAGAATCTATGGGATATCTTGGAATCCTGCAAGAAAACTCTCCCCCTTCACCATCTCCAGAACAAGAAGATTTGCATTGATCTTTCATGTTGGATAGTTCAACTTCAAACCGCCTGCAAATCTCACTCTTCCATGAAGGACAAGGTCTACCTGAGAGGCCTCTTTCACCGGCTTAGAGCCCTTCTTGCTTTGAATTGTAGCCTTATATTTGTTACGGATGGATCTATTCCCGCCATCAAATTATCTACTTATAGACGACGTCTGGGGTCAGATAGTGAGGTTACTCGAGATGAGACAAACTCGCACAAGGTGCTGTCACTTCGGAGAAACATGGGTTCTGAGTTTTCATGTATGATAAAAGAGGCCAAAGTCCTCGGCATGGCACTTGGTATCCCGTGCTTAGATGGGCTTGAGGAAGCAGAAGCACAGTGTGCATTGTTGAACTCAGAATCATTTTGTGATGGATGTTTCACCTCAGATTCAGATGTATTCCTTTTTGGTGCTAAGACAGTGTACAGAGATATTTACTTAGGGGAAGGTGGTCATGTAGTTTGTTATGAAATGGTAGACATAGAGAGAACACTTGGCTTTGGAAGGAACTCACTGATTACCATGGCCCTTCTTCTTGGCAGTGACTATTCTCAGGGTGTTCATGGGCTTGGCCGGGAGACAGCATGCCATATTGTTAAATTAATTGGGGAAGATAGTGTTCTTCAACGGATTGCATCAGAGGGATTGGCATTTGCCAGAAAGATGAAGGGGTCAAAGAAACAGGGCCAAGTTCTCGAGTGCAATGCAAACAAGGAGAACAGTTTGGTTTATAAACAGAATTGTAGTGTGAATGATCAAAGCCCACTAGAGGATGATCAGTTCTTGCAAGTGATCAATGCATATTTGAAGCCGAAATGCCACTCACCCGATTCAGCTCCTGTGCATAGAGTACTTGTTCAGTATCCATTTCAACGCACCAAACTTCAACAAATCTGTGCTCAGTTTTTTGGTTGGACTCCTGAGAAAACAGATGAGTATATCCTTCCCAAGATTGCCGAGAGAGACTTGAGGCGATTTGCCAACCTGCGTTCCACTTCATCAGAACTAGGAGTTCAGCTTCCATTGCACAAGATACCAGTTACCTGTCCTATATCTGCAATTATCAAGCACAGGAAAGTGCAGGGAAGGGAGTGTTTTGAGGTGGCCTGGGAAGAGCTGGATGGCCTCAAAAGTTCTGTAGTCCCTGCTGATCTCATAGAGAGTGCTTGCCCTGAGAAGATAGTGGAGTTCGAGGAGAGAAGAGCTGAAGGGAAGAAACCGAATCGTAGACCAAGGGCTAAGAAATCAGAAAGCATAGCTGCTGTGAATGAAGTCAATCTGAAGCTCCAAGGCTTGTTGCTTGACATAGAATCAGAAAGCAATGCTACTTTTAAGCCATCTATTTGTCAGACACCAATGGGTCAGAGCAGTGCTGAAGCTGAGGTCATTGATCTCTTAAGCCCTTCGCCACCCATCCGTGCTTGTAAAGTTTCCAAATGTCAAGAAACAGTTGGTCAGCATATTGATGTAATTGATTTAAGCGAGTCTGAAACTGACACGTCACCTGAGCACGAGAGGAAGGCAAGAGAGCTAAGATTGTTTATAGCAGGTATTAAAGAAGATATTTCCTGA 1671 0.4423 MGVKNLWDILESCKKTLPLHHLQNKKICIDLSCWIVQLQTACKSHSSMKDKVYLRGLFHRLRALLALNCSLIFVTDGSIPAIKLSTYRRRLGSDSEVTRDETNSHKVLSLRRNMGSEFSCMIKEAKVLGMALGIPCLDGLEEAEAQCALLNSESFCDGCFTSDSDVFLFGAKTVYRDIYLGEGGHVVCYEMVDIERTLGFGRNSLITMALLLGSDYSQGVHGLGRETACHIVKLIGEDSVLQRIASEGLAFARKMKGSKKQGQVLECNANKENSLVYKQNCSVNDQSPLEDDQFLQVINAYLKPKCHSPDSAPVHRVLVQYPFQRTKLQQICAQFFGWTPEKTDEYILPKIAERDLRRFANLRSTSSELGVQLPLHKIPVTCPISAIIKHRKVQGRECFEVAWEELDGLKSSVVPADLIESACPEKIVEFEERRAEGKKPNRRPRAKKSESIAAVNEVNLKLQGLLLDIESESNATFKPSICQTPMGQSSAEAEVIDLLSPSPPIRACKVSKCQETVGQHIDVIDLSESETDTSPEHERKARELRLFIAGIKEDIS* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00530 556 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Eupl14g00530 556 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Eupl14g00530 556 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Eupl14g00530 556 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Eupl14g00530 556 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Eupl14g00530 556 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Eupl14g00530 556 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Eupl14g00530 556 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Eupl14g00530 556 FunFam flap endonuclease GEN-like 2 2 199 - -
Eupl14g00530 556 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 363 IPR036279 -
Eupl14g00530 556 Gene3D - 382 449 - -
Eupl14g00530 556 SMART xpgineu 130 200 IPR006086 GO:0004518
Eupl14g00530 556 Gene3D - 201 260 - -
Eupl14g00530 556 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Eupl14g00530 556 SMART xpgn3 1 97 IPR006085 GO:0004518
Eupl14g00530 556 Gene3D - 2 199 - -
Eupl14g00530 556 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 527 IPR006084 -
Eupl14g00530 556 FunFam Flap endonuclease GEN-like 1 200 258 - -
Eupl14g00530 556 SUPERFAMILY Chromo domain-like 384 441 IPR016197 -
Eupl14g00530 556 CDD PIN_GEN1 2 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00530 Eupl-Chr14 6532868 6545626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00530 1 247 Core DNA Replication Machinery Family AT5G26680 25.094 1.24e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00530 K15338 - qsu:111998992 809.29