Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00526 ATGAGGAAGCTTATGGCTTCAGATGCTTTGAGTATTTCCAATGGAATCAAAGATGATAATGGGAAAAGTGGTGTCAAAAGTGAAGATCCAAGTGAGGAACCAATTGAGGAGCTGGTGTCAAAAGTGCAGAAACTGGTGTCAAAAGTGAAGCGTATGGCTTCAGATGCTTCAAGTATTTCCAATGGAAGCAAAAATGATAATGGGAAAACTGGTGTCCAAAGTGAAGAACCAAGTGAGGAACCAATTGAGGAGCTATTGGAAGAATCTGTGTCTCAGCCATCTTCAGATAGTGAGAATAATTACACTGAAAAATCATGCAAGCAACTGGAGGAGGAACTGAATGAGGAGCCATCAAAAGATTCGGCCTCTCAACCATCTTCAGACTGCAGCAATGATGACACTGAACAACCAAATGGGGGTTCGAGTGAGAAACCCGATGAGGAACCAACTGGGGAGCCATTGGAAGAATCTGTGTCTCAACCATCCTCGGACAATGTCAATGATGACAGTGAAAAGCCAATTGAGGAGCCATTTGAAGAATCTGTGTCTCAGCCATCCTCAGACAGTGACAATGATGACACTGAACACCGGTTGGAATCTGTTCCAATCAATTCAAATGAAAAGAAGAGGTCATTGGATGCAACAGCAGGTAAGTCAGGTCTGTTGCAAGTTTATCGGTTGCCAAAGAAGTGCAAGCAAGAGCAATCTTTGGAGCCAGAATCAGATGTTCAGTCTGCCATTACGGATCCTCGGCACAAATCTGGAATTTTTGAAGAGTTTGTTAATGATGGAAATGCTTCTGGGAAACAGGAACGTAGTGGAAGTTCTGGAAAACGAAGGCGTAGTAGATGGGATCCACAGCCTGAAGATGACGGGGAAGGGGGTGAAGGTAGTAGAACTAGTAAAAAGAGGAAAACCAGGTGGGCTAGTGATAACTCCCAGTTGAAAATGCTGGGTCCGATACACCTGCCTGACTTTGTGAAGGAAATTGTTGACAGAACCAACTTTGATCCTGAATTTCAGGAGCTGAATATGAAGCTTTTAGAAATAAACAGGAAGCTGCAGGGAGCAGAGGTCCATGATGACAGGCCAGAGGAAGAAAGATCTCCGTCTCCCTTGCAAGTGTATGATAACCTTGGGATCAGAATGAATTCAAGGAATGCCAGATTCCGTGAGAAACTTGTCCGAGATCGGCAGAGTATAATTTCAAGGTTGATTCAGAAGAATCCCACATTCAAGCCTCCTCCTAATTACAAGCCCCGTAAGCTCTGCAAGAAACTTTATATACCAATAAAAGAATATCCTGGGTATAATTTTGTTGGTCTTATAATTGGTCCCCGGGGGCTCACAATAAAGAGAATGGAGAAGAATACCGGCGCTAGGATTGTACTGAGGGGCAAAGGCTCTCAGATAGAAAGAAGAACACAGCTGAAGCCTGATCCTGCTGATAATGAAGACTTGCACGTCTTGGTAGAGGCAGATAACCAGAAATCACTTGATGAGGCAGTGAGAATGGTTGAAAAGATACTAATTCCAGTGGATGAGGGAATAAATGAGCACAAGCGTTTACAGTTAAAGGAGCTTGCCAAACTGAATGGAACTCTTAGGGATGAGAACCTGTGCAAAGTGTGTGGTGAGGAGGGGCACAAGCATTACGCTTGCCCCAGCAGCCAAAATTTAACTTTTAGTGTTGATGTCTCCTGCGACACATGTGGTGGCAGCACCCATCCTACTGCCAAATGCCCCTTGACAGCATCAGCTCCTGGTAGCAATGTTGGCAACCAACATCCTAGCTTTCTTGGGGACCTTGGACGAGGAGGGGGGCTCGCATTGAGTACCTCACCCATTTCAAGTATGCCCTGGTGGGATGGCAACACTGGGTTGGGTACTTCACCATCCTATGGTTCTTATTTTCACCCTGGCCTTGGTTCAACTCCAACCACAGACAGCAAATCCAACAAAGAAGTTGATGATTCAAAACTATACGTGGGCTATCTTCCTCAAAGTGTGGATGACAATCGGTTAATAGAGCTGTTTTCTCCTTTTGGCAGGCTAACTGAAGCAAAAGTGATCAAGGATCGAAGCACAGGTTTCAGTAAAGGCTATGGCTTTGTTAAGTTTGATGGTCCCATCAGGGCTGCCACAGCCTTGTCACACATGAATGGGTATAAGATTGAGGGGAAGATGTTGGCAGTGAAGGTTGCAGGACAGCTGCCACCAGCAGGATGCTCAAGCATTAGCCTTCTCCCGAAGTACCCTGGTTCTGCAAGAGTGTCCCAAGATAGCCCCAGTCAGGCAGCTTGGCCAGGCCCACCAGGATCAATGCTGCCTGAGCCTCAGTCTTCCTTTTCTAAGAGTGAGGGCTTAGGTTTGCCTCCATTGTCTGTCTTCTTGGGGCACAGCGATTCCTCCACCAAACAATTACCTTCATCTTATGGATCGTCATACCAAATTCCAATCTCATCACCTGGTTATCTTGCATGGTTCCCCGGTAATCCAGATTACCTTAGCTCCAAATATCAGTCATATTTCACTACACCAAGCAATCCATCTCCACACTTCCATCTCACTCGGGCACGGGGCAGCAGCATGGCACCTCATCCTTGGGTGCCCATTCATCCTCCCTGGAGAGATACCAAAGCTATAGAATTCGAATATGAGAAGTTTATGTAA 2673 0.4572 MRKLMASDALSISNGIKDDNGKSGVKSEDPSEEPIEELVSKVQKLVSKVKRMASDASSISNGSKNDNGKTGVQSEEPSEEPIEELLEESVSQPSSDSENNYTEKSCKQLEEELNEEPSKDSASQPSSDCSNDDTEQPNGGSSEKPDEEPTGEPLEESVSQPSSDNVNDDSEKPIEEPFEESVSQPSSDSDNDDTEHRLESVPINSNEKKRSLDATAGKSGLLQVYRLPKKCKQEQSLEPESDVQSAITDPRHKSGIFEEFVNDGNASGKQERSGSSGKRRRSRWDPQPEDDGEGGEGSRTSKKRKTRWASDNSQLKMLGPIHLPDFVKEIVDRTNFDPEFQELNMKLLEINRKLQGAEVHDDRPEEERSPSPLQVYDNLGIRMNSRNARFREKLVRDRQSIISRLIQKNPTFKPPPNYKPRKLCKKLYIPIKEYPGYNFVGLIIGPRGLTIKRMEKNTGARIVLRGKGSQIERRTQLKPDPADNEDLHVLVEADNQKSLDEAVRMVEKILIPVDEGINEHKRLQLKELAKLNGTLRDENLCKVCGEEGHKHYACPSSQNLTFSVDVSCDTCGGSTHPTAKCPLTASAPGSNVGNQHPSFLGDLGRGGGLALSTSPISSMPWWDGNTGLGTSPSYGSYFHPGLGSTPTTDSKSNKEVDDSKLYVGYLPQSVDDNRLIELFSPFGRLTEAKVIKDRSTGFSKGYGFVKFDGPIRAATALSHMNGYKIEGKMLAVKVAGQLPPAGCSSISLLPKYPGSARVSQDSPSQAAWPGPPGSMLPEPQSSFSKSEGLGLPPLSVFLGHSDSSTKQLPSSYGSSYQIPISSPGYLAWFPGNPDYLSSKYQSYFTTPSNPSPHFHLTRARGSSMAPHPWVPIHPPWRDTKAIEFEYEKFM* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00526 890 MobiDBLite consensus disorder prediction 53 74 - -
Eupl14g00526 890 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 423 545 IPR036612 GO:0003723
Eupl14g00526 890 SMART kh_6 421 511 IPR004087 GO:0003676
Eupl14g00526 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 659 737 IPR000504 GO:0003723
Eupl14g00526 890 Pfam Splicing factor 1 helix-hairpin domain 304 419 IPR032570 -
Eupl14g00526 890 Gene3D K Homology domain, type 1 419 537 IPR036612 GO:0003723
Eupl14g00526 890 SUPERFAMILY RNA-binding domain, RBD 632 736 IPR035979 GO:0003676
Eupl14g00526 890 Gene3D - 538 596 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 273 310 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 189 214 - -
Eupl14g00526 890 ProSiteProfiles Type-1 KH domain profile. 438 506 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 1 313 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 754 786 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 88 102 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 103 118 - -
Eupl14g00526 890 MobiDBLite consensus disorder prediction 21 39 - -
Eupl14g00526 890 PANTHER RNA-BINDING PROTEIN RELATED 277 777 IPR045071 -
Eupl14g00526 890 Gene3D - 642 741 IPR012677 -
Eupl14g00526 890 Gene3D - 334 415 IPR047086 -
Eupl14g00526 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 661 728 IPR000504 GO:0003723
Eupl14g00526 890 Pfam KH domain 438 506 IPR004088 GO:0003723
Eupl14g00526 890 CDD KH-I_BBP 422 511 - -
Eupl14g00526 890 SUPERFAMILY Retrovirus zinc finger-like domains 536 583 IPR036875 GO:0003676|GO:0008270
Eupl14g00526 890 SMART rrm1_1 660 733 IPR000504 GO:0003723
Eupl14g00526 890 MobiDBLite consensus disorder prediction 119 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00526 Eupl-Chr14 6455123 6457795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00526 651 793 Eukaryotic Initiation Factors Gene Family AT1G49760 33.133 2.12e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00526 K13095 - nnu:104608792 734.176