LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl14g00519	ATGAATACGCGAGGTAGATATCCTCCCGGGATCGGCAACGGTCGCGGTGGAAATTTTAACTCAAACCCTAATTTTCAAGCTAGAAACCCTCAACAGCAGTACGTGCAAAGGAATCCTGTGCAGAATCCGCAGCAGTTTCATCAGCAGCAGCAGCAGCAATGGCTGAGAAGAAATCCGATGGGGACTGATTCAGGTGCTAATGAAGTTGAAAAAGCAGTACAGTCAGAAAGCGTTGATTCGAGTTCTCAAGATTGGAAGGCACGACTAAAGATACCACCAAGTGATACACGTTACAAGACAGAGGATGTGACCGCTACTAAAGGAAATGAATTTGAAGACTACTTTCTGAAACGCGAGCTGCTTATGGGTATATATGAAAAGGGGTTTGAAAGACCTTCTCCCATCCAGGAAGAAAGCATTCCAATTGCTTTAACTGGAAGTGATATTCTTGCTAGAGCTAAAAATGGGACAGGAAAGACGGCTGCATTTAGCATTCCTGCATTGGAAAAAATTGATCAAGATTACAATGCTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCACTTCAGACATCACAAGTCTGTAAGGAGCTCGGAAAGCATTTGAATATTCAAGTCATGGTCACCACTGGAGGAACCAGTCTAAAGGATGATATCATGCGTCTATATCAACCCGTCCATTTGCTTGTTGGAACTCCTGGTAGAATACTTGATCTTGCAAAAAAGGGTGTATGCATCTTGAAAGATTGCTCAATGCTTGTTATGGATGAGGCTGACAAGCTTTTGTCTCCTGAGTTTCAACCTTCAGTGGAGCAGCTGATTCGTTTTCTACCTGCAAATCGGCAAATATTGTTGTTTTCAGCAACATTTCCTGTAACTGTTAAGGATTTTAAAGATAGATATCTCCATAAGCCGTACATCATTAATCTCATGGATGAGCTTACCCTCAAGGGTATAACACAGTACTATGCGTTTGTAGAAGAAAGACAGAAGGTCCACTGTCTAAACACTCTTTTCTCTAAGCTTCAAATCAACCAGTCAATCATATTTTGCAACTCAGTGAATCGGGTGGAACTGTTGGCCAAGAAAATTACGGAGCTTGGCTATTCTTGCTTCTACATTCATGCTAAAATGTTGCAAGATCATCGTAACCGGGTTTTTCATGACTTTCGTAATGGTGCATGCAGGAATCTTGTTTGTACGGATTTATTCACTAGAGGGATAGACATTCAAGCCGTCAATGTCGTTATAAATTTTGATTTCCCTAAGAACTCGGAAACATATCTGCACAGGGTTGGTCGATCGGGAAGGTTTGGGCATCTCGGGTTAGCCGTGAATTTGATCACCTACGAGGACCGTTTCAACTTGTATAGGATCGAACAAGAACTTGGGACTGAAATAAAGCAAATTCCTCCACAAATTGACCAGGCTATTTACTGCAGGTGA	1452	0.4187	MNTRGRYPPGIGNGRGGNFNSNPNFQARNPQQQYVQRNPVQNPQQFHQQQQQQWLRRNPMGTDSGANEVEKAVQSESVDSSSQDWKARLKIPPSDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDYNAIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILLFSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR*	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl14g00519	483	CDD	DEADc_DDX6	111	311	-	-
	Eupl14g00519	483	FunFam	ATP-dependent RNA helicase DDX6	314	483	-	-
	Eupl14g00519	483	Pfam	Helicase conserved C-terminal domain	335	441	IPR001650	-
	Eupl14g00519	483	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	256	264	IPR000629	-
	Eupl14g00519	483	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	47	482	-	-
	Eupl14g00519	483	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	320	480	IPR001650	-
	Eupl14g00519	483	FunFam	ATP-dependent RNA helicase DDX6	90	313	-	-
	Eupl14g00519	483	Pfam	DEAD/DEAH box helicase	134	298	IPR011545	GO:0003676\|GO:0005524
	Eupl14g00519	483	Gene3D	-	67	313	IPR027417	-
	Eupl14g00519	483	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	109	137	IPR014014	GO:0003724
	Eupl14g00519	483	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	463	IPR027417	-
	Eupl14g00519	483	CDD	SF2_C_DEAD	321	450	-	-
	Eupl14g00519	483	MobiDBLite	consensus disorder prediction	1	65	-	-
	Eupl14g00519	483	SMART	helicmild6	360	441	IPR001650	-
	Eupl14g00519	483	SMART	ultradead3	128	324	IPR014001	-
	Eupl14g00519	483	Gene3D	-	314	483	IPR027417	-
	Eupl14g00519	483	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	140	310	IPR014001	-
	Eupl14g00519	483	MobiDBLite	consensus disorder prediction	15	60	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl14g00519	Eupl-Chr14	6351071	6369363	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl14g00519	111	480	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.710	2.82e-96	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl14g00519	K12614		-	nnu:104596115	909.442