Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00492 ATGAGGAAGCTTATGGCTTCAGATGCTTTGAGTATTTCCAATGGAACCAAAGATGATAATGGGAAAAGTGGTGTCAAAAGTGAAGATCCAAGTGAGGAACCAATTGAGGAGCTGGTGTCAAAAGTGCAGAAACTGGTGTCAAAAGTGAAGCGTATGGCTTCAGATGCTTCAAGTATTTCCAATGGAAGCAAAAATGATAATGGGAAAACTGGTGTCCAAAGTGAAGAACCAAGTGAGGAACCAATTGAGGAGCTATTGGAAGAATCTGTGTCTCAGCCATCTTCAGATAGTGAGAATAATTACACTGAACAACCATGCAAGCAACTGGAGGAGGAACTGAATGAGGAACCATCAAAAGATTCGGCCTCTCAACCATCTTCAGACTGCAGCAATGATGACACTGAACAACCAAATGGGGGTTCGAGTGAGAAACCCGATGAGGAACCAACTGGGGAGCCATTGGAAGAATCTGTGTCTCAACCATCCTCAGACAATGTCAATGACGACAGTGAAAAGCCAATTGAGGAGCCAGGTGAGGAGCCATTTGAAGAATCTGTGTCTCAGCCATCTTCAGACAGTGACAATGATGACACTGAACACCGGTTGGAATCTGTTCCAATCAATTCAAATGAAAAGAAGAGGTCATTGGATGCAACAGCAGGTAAGTCAGGTCTGTTGCAAGTTTATCGGTTGCCAAAGAAGTGCAAGCAAGAGCAATCTTTGGAGCCAGAATCAGATGTTCAGTCTGCCATTATGGATCCTCGGAACAAATCTGGAATTTTTGAAGAGTTTGTTAATGATGGAAATGCTTCTGGGAAACAGGAACGTAGTGGAAGTTCTGGAAAACGAAGGCGTAGTAGATGGGATCCACAGCCTGAAGATGACGGGGAAGGGGGTGAAGGTAGTAGAACTAGTAAAAAGAGGAAAACCAGGTGGGCTAGTGATAACTCCCAGTTGAAAATGCTGGGTCCGATACACCTGCCTGACTTTGTGAAGGAAATTGTTGACAGAACCAACTTTGATCCTGAATTTCAGGAGCTGAATATGAAGCTTTTAGAAATAAACAGGAAGCTGCAGGGAGCAGAGGTCCATGATGACAGGCCAGAGGAAGAAAGATCTCCGTCTCCCTTGCAAGTGTATGATAACCTTGGGATCAGAATGAATTCAAGGAATGCCAGATTCCGTGAGAAACTTGTCCGAGATCGGCAGAGTATAATTTCAAGGTTGATTCAGAAGAATCCCACATTCAAGCCTCCTCCTAATTACAAGCCCCGTAAGCTCTGCAAGAAACTTTATATACCAATAAAAGAATATCCTGGGTATAATTTCGTTGGTCTTATAATTGGTCCCCGGGGGCTCACAATAAAGAGAATGGAGAAGAATACCGGCGCTAGGATTGTACTGAGGGGCAAAGGCTCTCAGATAGAAAGAAGAACACAGCTGAAGCCTGATCCTGCTGATAATGAAGACTTGCACGTCTTGGTAGAGGCAGATAACCAGAAATCACTTGATGAGGCAGTGAGAATGGTTGAAAAGATACTAATTCCAGTGGATGAGGGAATAAATGAGCACAAGCGTTTACAGTTAAAGGAGCTTGCCAAACTGAATGGAACTCTTAGGGATGAGAACCTGTGTAAAGTGTGTGGTGAGGAGGGGCACAAGCATTACGCTTGCCCCAGCAGCCAAAATTTAACTTTTAGTGTTGATGTCTCCTGCGACACATGTGGTGGCAGCACCCATCCTACTGCCAAATGCCCCTTGACAGCATCAGCTCCTGGTAGCAATGTTGGCAACCAACATCCTAGCTTTCTTGGGGACCTTGGACGAGGAGGGGGGCTCGCATTGAGTACCTCGCCCATTTCAAGTATGCCCTGGTGGGATGGCAACACTGGGTTGGGTACTTCACCATCCTATGGTTCTTATTTTCGCCCTGGCCTTGGTTCAACTCCAACCACAGACAGCAAATCCAACAAAGAAGTTGATGATTCAAAACTATACGTGGGCTATCTTCCTCAAAGTGTGGATGACAATCGGTTAATAGAGCTGTTTTCTCCTTTTGGCAGGCTAACTGAAGCAAAAGTGATCAAGGATCGAAGCACAGGTTTCAGTAAAGGCTACGGCTTTGTTAAGTTTGATGGTCCCATCAGGGCTGCCACAGCCTTGTCACACATGAATGGGTATAAGATTGATGGGAAGATGTTGGCAGTGAAGGTTGCAGGACAGCTGCCTCCAGCAGGATGCTCAAGCATTAGCCTTCTCCCGAAGTACCCTGGTTCTGCAAGAGTGTCCCAAGATAGCCCCAGTCAGGCAGCTTGGCCAGGCCCACCAGGATCAATGCTGCCTGAGCCTCAGTCTTCCTTTTCTAAGAGTGAGGGCTTAGGTTTGCCTCCCTTGTCTGTCTTCTTGGGGCACAGCGATTCCTCCACCAAACAATTACCTTCATCTTATGGATCGTCGTACCAAATTCCAATCTCATCACCTGGTTATCTTGCATGGTTCCCCGGTAATCCAGATTACCTTAGCTCCAAATATCAGTCATATTTCACTACACCAAGCAATCCATCTCCACACTTCCATCTCACTCGGGCACGGGGCAGCAGCATGGCACCTCATCCTTGGGTGCCCATTCATCCTCCCTGGAGAGATACCAAAGCTATAGAATTCGAATACGAGAAGTTTATGTAA 2685 0.4596 MRKLMASDALSISNGTKDDNGKSGVKSEDPSEEPIEELVSKVQKLVSKVKRMASDASSISNGSKNDNGKTGVQSEEPSEEPIEELLEESVSQPSSDSENNYTEQPCKQLEEELNEEPSKDSASQPSSDCSNDDTEQPNGGSSEKPDEEPTGEPLEESVSQPSSDNVNDDSEKPIEEPGEEPFEESVSQPSSDSDNDDTEHRLESVPINSNEKKRSLDATAGKSGLLQVYRLPKKCKQEQSLEPESDVQSAIMDPRNKSGIFEEFVNDGNASGKQERSGSSGKRRRSRWDPQPEDDGEGGEGSRTSKKRKTRWASDNSQLKMLGPIHLPDFVKEIVDRTNFDPEFQELNMKLLEINRKLQGAEVHDDRPEEERSPSPLQVYDNLGIRMNSRNARFREKLVRDRQSIISRLIQKNPTFKPPPNYKPRKLCKKLYIPIKEYPGYNFVGLIIGPRGLTIKRMEKNTGARIVLRGKGSQIERRTQLKPDPADNEDLHVLVEADNQKSLDEAVRMVEKILIPVDEGINEHKRLQLKELAKLNGTLRDENLCKVCGEEGHKHYACPSSQNLTFSVDVSCDTCGGSTHPTAKCPLTASAPGSNVGNQHPSFLGDLGRGGGLALSTSPISSMPWWDGNTGLGTSPSYGSYFRPGLGSTPTTDSKSNKEVDDSKLYVGYLPQSVDDNRLIELFSPFGRLTEAKVIKDRSTGFSKGYGFVKFDGPIRAATALSHMNGYKIDGKMLAVKVAGQLPPAGCSSISLLPKYPGSARVSQDSPSQAAWPGPPGSMLPEPQSSFSKSEGLGLPPLSVFLGHSDSSTKQLPSSYGSSYQIPISSPGYLAWFPGNPDYLSSKYQSYFTTPSNPSPHFHLTRARGSSMAPHPWVPIHPPWRDTKAIEFEYEKFM* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00492 894 MobiDBLite consensus disorder prediction 53 74 - -
Eupl14g00492 894 Gene3D - 338 419 IPR047086 -
Eupl14g00492 894 SMART rrm1_1 664 737 IPR000504 GO:0003723
Eupl14g00492 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 665 732 IPR000504 GO:0003723
Eupl14g00492 894 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 427 549 IPR036612 GO:0003723
Eupl14g00492 894 Pfam Splicing factor 1 helix-hairpin domain 308 423 IPR032570 -
Eupl14g00492 894 MobiDBLite consensus disorder prediction 1 317 - -
Eupl14g00492 894 MobiDBLite consensus disorder prediction 21 39 - -
Eupl14g00492 894 SUPERFAMILY RNA-binding domain, RBD 637 740 IPR035979 GO:0003676
Eupl14g00492 894 Gene3D - 542 600 - -
Eupl14g00492 894 PANTHER RNA-BINDING PROTEIN RELATED 281 781 IPR045071 -
Eupl14g00492 894 Pfam KH domain 442 510 IPR004088 GO:0003723
Eupl14g00492 894 Gene3D K Homology domain, type 1 423 541 IPR036612 GO:0003723
Eupl14g00492 894 ProSiteProfiles Type-1 KH domain profile. 442 510 - -
Eupl14g00492 894 Gene3D - 643 745 IPR012677 -
Eupl14g00492 894 CDD KH-I_BBP 426 515 - -
Eupl14g00492 894 MobiDBLite consensus disorder prediction 119 138 - -
Eupl14g00492 894 MobiDBLite consensus disorder prediction 277 314 - -
Eupl14g00492 894 MobiDBLite consensus disorder prediction 193 218 - -
Eupl14g00492 894 MobiDBLite consensus disorder prediction 758 790 - -
Eupl14g00492 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 663 741 IPR000504 GO:0003723
Eupl14g00492 894 SMART kh_6 425 515 IPR004087 GO:0003676
Eupl14g00492 894 MobiDBLite consensus disorder prediction 88 107 - -
Eupl14g00492 894 SUPERFAMILY Retrovirus zinc finger-like domains 540 587 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00492 Eupl-Chr14 6023604 6026288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00492 655 797 Eukaryotic Initiation Factors Gene Family AT1G49760 33.133 3.17e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00492 K13095 - nnu:104608792 730.324