Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00379 ATGACCTCAACAGTACGCAGAGTTTATGCAGACGGGCTGTCATCTTTTGATTCTTATCAGGGTTCTTCTTCTGTAAAATTGTCTCCGATCTCCTGCAAGTTCTCTCGAACAGCAGAGATGCCGCGTTCAAGAGAAGGAAGGTCTACTTCTCGCTCTCTCTCGCATTCACCCCGTAGAGTTCGTAGGTCAAGATCATTGTCAAGGTCAAGGGGGAGGAGTCGCTCCAGGAGTCGAGATTCTGGAGAAGCAGTTAATCCCGGAAATAACTTGTATGTGACAGGCTTATCCACAAGGGTAACTGAAAGTGATCTTGAGAAACATTTTAGCACTGAAGGCAAGGTTCTGGAATGCCAGCTGGTTACGGATCCTCGCACTAGGGAATCACGTGGATTTGGGTTTGTTATGATGGAAACAGTTGAGGGTGCCGAACGCTGTATCAAATATCTAAACCGTTCTGTCCTTGAAGGTCGATTAATATCAGTGCAGAAGGCAAAGCGGAAGCGTGGGAGGACACCAACTCCAGGCAAATACCATGGTCTGAAAGACAGAAGAGGACATGGTCGTGGTCGGTCTCGTAGCTACTCACCTCGCCGACGGCAAGAGAGAGATGGCTCTTATTCGAGGGGTCGGCGGGGACGATCTCGGTCTCCATGTGGGAGAAGGGGAGAAGCATAG 675 0.4948 MTSTVRRVYADGLSSFDSYQGSSSVKLSPISCKFSRTAEMPRSREGRSTSRSLSHSPRRVRRSRSLSRSRGRSRSRSRDSGEAVNPGNNLYVTGLSTRVTESDLEKHFSTEGKVLECQLVTDPRTRESRGFGFVMMETVEGAERCIKYLNRSVLEGRLISVQKAKRKRGRTPTPGKYHGLKDRRGHGRGRSRSYSPRRRQERDGSYSRGRRGRSRSPCGRRGEA* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00379 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 159 IPR000504 GO:0003723
Eupl14g00379 224 SUPERFAMILY RNA-binding domain, RBD 80 193 IPR035979 GO:0003676
Eupl14g00379 224 MobiDBLite consensus disorder prediction 194 224 - -
Eupl14g00379 224 MobiDBLite consensus disorder prediction 18 90 - -
Eupl14g00379 224 MobiDBLite consensus disorder prediction 163 224 - -
Eupl14g00379 224 MobiDBLite consensus disorder prediction 54 71 - -
Eupl14g00379 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Eupl14g00379 224 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 77 220 - -
Eupl14g00379 224 MobiDBLite consensus disorder prediction 38 52 - -
Eupl14g00379 224 Gene3D - 33 172 IPR012677 -
Eupl14g00379 224 SMART rrm1_1 89 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00379 Eupl-Chr14 4571538 4578633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00379 89 173 Eukaryotic Initiation Factors Gene Family AT1G49760 30.588 9.88e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00379 K12897 - nnu:104596011 226.098