Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00162 ATGGAGTTGGATAACATTGAATGCATCTCCTCCTCGGATGGGATCGATGAGGAGGAGACTCATCATCACCCTTTCTCTTCGAAGCCTCACAACAATATCGTCTCTTCCGTGATTTCTCCGGCCACCAGTGTCCATGAGCTCCTCGAATGTCCCGTCTGCACCAATTCAATGTACCCACCAATCCATCAGTGCCACAATGGGCACACCCTGTGTTCCACCTGTAAAACAAGGGTGCACAACCGATGCCCAACTTGTAGACAGGAGCTCGGAGATATCAGGTGTCTAGCATTGGAAAAAGTAGCCGAGTCTCTTGAACTGCCCTGCAAGTACTGCTCCCTGGGTTGCCCAGAGATCTTCCCATACTACAGCAAGCTCAAGCATGAGGCACAGTGTAACTTCAGACCATACAACTGCCCATATGCCGGATCAGAGTGCTCTGTTGTTGGGGATATCCCTTTCTTGGTCGCCCATCTAAGGGATGACCACAAGGTGGATATGCACACAGGATGCACATTCAACCATCGATACGTGAAGTCTAATCCCCGCGAAGTTGAAAATGCCACCTGGATGTTGACAGTCTTCAACTGCTTTGGTCAGTACTTCTGTCTGCACTTTGAAGCGTTCCAACTCGGCATGGCCCCTGTGTACATGGCATTCCTCCGTTTCATGGGCGACGAGACCGAGGCCAGGAACTTCAGCTACAGTCTGGAGGTAGGGGCAAATGGTCGGAAACACATTTGGGAAGGCACCCCTCGGAGCATCCGTGATAGCCACCGGAAGGTCCGGGACAGCCATGACGGTCTCATTATCCAGCGTAACATGGCACTTTTTTTCTCTGGTGGGGACAGGAAAGAACTGAAGCTGCGGGTTACAGGGCGGATATGGAAGGAACAACAGAATTCAGACGCTGGGGTGTGCATACCCAACCAATGTAGCTGA 939 0.5154 MELDNIECISSSDGIDEEETHHHPFSSKPHNNIVSSVISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAQCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNFSYSLEVGANGRKHIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCIPNQCS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00162 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 156 IPR013083 -
Eupl14g00162 312 ProSiteProfiles Zinc finger SIAH-type profile. 103 163 IPR013010 GO:0008270
Eupl14g00162 312 FunFam E3 ubiquitin-protein ligase SINAT3 100 158 - -
Eupl14g00162 312 SUPERFAMILY TRAF domain-like 103 295 - -
Eupl14g00162 312 CDD RING-HC_SIAHs 48 86 - -
Eupl14g00162 312 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 32 297 - -
Eupl14g00162 312 CDD Sina 164 292 - -
Eupl14g00162 312 Pfam Seven in absentia protein family 92 291 IPR018121 GO:0005737|GO:0006511|GO:0007275
Eupl14g00162 312 SUPERFAMILY RING/U-box 41 89 - -
Eupl14g00162 312 ProSiteProfiles Zinc finger RING-type profile. 50 86 IPR001841 -
Eupl14g00162 312 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 157 291 IPR008974 GO:0005515
Eupl14g00162 312 FunFam E3 ubiquitin-protein ligase SINAT5-like 159 291 - -
Eupl14g00162 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00162 Eupl-Chr14 2001722 2008602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00162 10 298 C3H Transcription Factor Family AT2G41980 75.000 9.61e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00162 K04506 - nnu:104604027 651.744