Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00159 ATGGAGATCCAGCAAAGAAAGCGAAGCATGGGTCGCAGAAAGATCCCAATCATGAAGATAGAGCGATCAGCAAACCGACAGGTTACCTTCTCGAAGCGTCGTGCTGGGCTTTTCAAGAAAGCGAGCGAGTTATGCATTCTTTGTGGTGCCCAGATAGCCATCATTGTGTTCTCTCCGGCTGGGAAGCCCTTCTCCTTCGGTCATCCGTGTGTTGACTCTGTAGTAGACTGGTTTCTAACCCGACGGGACGTTGATCGGCCGCTCCCACTTATCAACTCTCATCAAATGGTCGGTGCAAGTGAGCAGCATCAACAGTACACGGAGGTTCTTAGTCAATTGGAAGCGGAGAAGAAGCGCGGAGAAACGCTTGAGCAGGTAAGGAAAACAGAGTGGGGTCCATTTTGGTGGGATGCACCGATCGATGATCTTGAATTGCATGAGCTCGAACAAATAAGAGTGTCCATGGAAGAGCTGAAGAAGAAGGTGGTGAAGCAAGCTGAAGCGCTAATGATGGGAGGTTCTTCTCCGTCGTCGTTCTTAGCAGGGTTGGTAGATCCCTTTGTTAATCAAACAACACAGTTTAATACGTCTGTTGTTCCTTATGGTTTTGATTTTTGA 618 0.4822 MEIQQRKRSMGRRKIPIMKIERSANRQVTFSKRRAGLFKKASELCILCGAQIAIIVFSPAGKPFSFGHPCVDSVVDWFLTRRDVDRPLPLINSHQMVGASEQHQQYTEVLSQLEAEKKRGETLEQVRKTEWGPFWWDAPIDDLELHELEQIRVSMEELKKKVVKQAEALMMGGSSPSSFLAGLVDPFVNQTTQFNTSVVPYGFDF* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00159 205 SUPERFAMILY SRF-like 11 95 IPR036879 GO:0003677|GO:0046983
Eupl14g00159 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Eupl14g00159 205 Gene3D - 23 88 IPR036879 GO:0003677|GO:0046983
Eupl14g00159 205 PANTHER MADS BOX PROTEIN 12 164 - -
Eupl14g00159 205 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Eupl14g00159 205 Gene3D - 90 178 - -
Eupl14g00159 205 CDD MADS_MEF2_like 11 80 IPR033896 GO:0000977|GO:0045944
Eupl14g00159 205 Coils Coil 96 116 - -
Eupl14g00159 205 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Eupl14g00159 205 Coils Coil 148 168 - -
Eupl14g00159 205 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Eupl14g00159 205 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Eupl14g00159 205 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Eupl14g00159 205 FunFam Agamous-like MADS-box protein AGL62 22 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00159 Eupl-Chr14 1953584 1954318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00159 9 189 Type I MADS-box Gene Family AT2G24840 45.263 1.07e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl14g00159 SRF-TF 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00159 - - nnu:104611768 209.149