Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00146 ATGAATCAACCCAGACCAGTAATCATCCCTTTGCCTGTTGAGATGGGCTTGAAGGAGGATCTGAAAGTGGAGCTTCCAATAATCATGTTTGATGAGGATTTAAAGGCTAAGGATTCACAATGTTGCGTTTGCCTGGGAGATTTCGAGCTCGACGAGCAGTTGCACCAGATACCATCTTGCAAACACATGTTTCATATTGATTGCATTCATCATTGGCTTCGCGCAAACTCCACATGTCCACTTTGCAGATGCTCCATCCTTCCGGCTAGAAAACTTAATTCAGATCCACCAGTCCGATTCAACATACTTCAACCAAGTGATGCAAATTCCGGCCATGGCAATGGCCCACAACTAAGCTCTTCGGAACAAGAACTAGTTGGTGTTGTAGGCAGATCAAGTTTGAACCACAACAATTTTTCAAGGGAGGAGGATTTGAGTCGAATCGAAGAATCAACTAGTGAGAGAACATGTTTAACCGAGTCGGGCAATTCACAAGAGTCGAACTCAGTTGTTGTCCAGATTCAGATTCCTGCTCCATGA 540 0.4426 MNQPRPVIIPLPVEMGLKEDLKVELPIIMFDEDLKAKDSQCCVCLGDFELDEQLHQIPSCKHMFHIDCIHHWLRANSTCPLCRCSILPARKLNSDPPVRFNILQPSDANSGHGNGPQLSSSEQELVGVVGRSSLNHNNFSREEDLSRIEESTSERTCLTESGNSQESNSVVVQIQIPAP* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00146 179 MobiDBLite consensus disorder prediction 140 154 - -
Eupl14g00146 179 CDD RING-H2_EL5-like 40 83 - -
Eupl14g00146 179 Pfam Ring finger domain 40 83 IPR001841 -
Eupl14g00146 179 ProSiteProfiles Zinc finger RING-type profile. 41 83 IPR001841 -
Eupl14g00146 179 PANTHER RING-H2 FINGER PROTEIN ATL16 14 154 IPR044600 GO:0016567|GO:0016740
Eupl14g00146 179 SMART ring_2 41 82 IPR001841 -
Eupl14g00146 179 MobiDBLite consensus disorder prediction 155 179 - -
Eupl14g00146 179 SUPERFAMILY RING/U-box 25 96 - -
Eupl14g00146 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 88 IPR013083 -
Eupl14g00146 179 MobiDBLite consensus disorder prediction 140 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00146 Eupl-Chr14 1857240 1859458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00146 13 98 C3H Transcription Factor Family AT1G33480 50.575 5.61e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00146 K19039 - msin:131241178 165.236