Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00127 ATGAGCCTTCCTTTAAAGCTTGGATCAAACCCAGGGCATCTCATTCCACAATCAGCTATCCCGCCGCAGAAAATTGAAATTGAAGACCCCATCTTATGGCTCGAGCCTCGGCTTCTTCCACAGAGTCTGCTCGAGAATCCAACAAAGAAAGCGAAGCATGGGTCGCAGGAAGATCCAATCATGAAGATAGAGCAATTAGCAAACCGACAGGTTACCTTCTCGAAACGTCGTGCTGGGCTCTTTAAGAAGGCAAGCGAGCTGTGCATTCTTTGTGGTGCCGAGATCGCCATAATTGTATTCTCCCCGGCTGGGAAGCCCTTCTCCTTCGGTCATCCGTGTGTCGACTCCGTAGTAGACCGGTTTCTAACCCGACGGGACGTTGGTCAGCCACTCCCACTTATAAACTCTCGTCAAATGGTCGATGCAGGTGAGCAGCATCAACAGTACACGGAGGTTCTTAGCCAATTAGAAGCGGAGAAGAAGCGTGGAGAAACACTTAAGCAGTTGAGGGAAGCTGAGTGGGGTCTGTTTTGGTGGGATGCACCAATCGATGATCTCATGTTGCATGAGCTCGAGCAAATGAAAGCGTCCATGGAAGAGCTGAAGAAGAAGGTGGCAAACCGAGCTGAAGCGCTAATGATGGGAGGTTGTTCTCCGTCGTCGTTCTTGGCAGGGGTGGTAGATCCCATTGTTAATCAAAGAACACAGTTTAATATGTCTGTTGTTCCTTATGGTTTTGATTTTTGA 747 0.4886 MSLPLKLGSNPGHLIPQSAIPPQKIEIEDPILWLEPRLLPQSLLENPTKKAKHGSQEDPIMKIEQLANRQVTFSKRRAGLFKKASELCILCGAEIAIIVFSPAGKPFSFGHPCVDSVVDRFLTRRDVGQPLPLINSRQMVDAGEQHQQYTEVLSQLEAEKKRGETLKQLREAEWGLFWWDAPIDDLMLHELEQMKASMEELKKKVANRAEALMMGGCSPSSFLAGVVDPIVNQRTQFNMSVVPYGFDF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00127 248 PANTHER MADS BOX PROTEIN 60 207 - -
Eupl14g00127 248 ProSiteProfiles MADS-box domain profile. 53 113 IPR002100 GO:0003677|GO:0046983
Eupl14g00127 248 Coils Coil 139 159 - -
Eupl14g00127 248 Gene3D - 67 131 IPR036879 GO:0003677|GO:0046983
Eupl14g00127 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 62 109 IPR002100 GO:0003677|GO:0046983
Eupl14g00127 248 SUPERFAMILY SRF-like 59 135 IPR036879 GO:0003677|GO:0046983
Eupl14g00127 248 PRINTS MADS domain signature 75 90 IPR002100 GO:0003677|GO:0046983
Eupl14g00127 248 PRINTS MADS domain signature 90 111 IPR002100 GO:0003677|GO:0046983
Eupl14g00127 248 PRINTS MADS domain signature 55 75 IPR002100 GO:0003677|GO:0046983
Eupl14g00127 248 FunFam Agamous-like MADS-box protein AGL62 65 129 - -
Eupl14g00127 248 Gene3D - 140 214 - -
Eupl14g00127 248 Coils Coil 188 211 - -
Eupl14g00127 248 CDD MADS_MEF2_like 60 123 IPR033896 GO:0000977|GO:0045944
Eupl14g00127 248 SMART madsneu2 20 112 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00127 Eupl-Chr14 1664583 1665704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00127 54 232 Type I MADS-box Gene Family AT2G24840 44.149 3.70e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl14g00127 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00127 - - nnu:104611768 194.126