Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00116 ATGGCTGCTGCAAGAACCCTCAAAAGGAGAAGAACCCAAGCCCCAATGCGGCTGTCTCTGCCTTTGAACGACACCTGTGAAGGCCAAGAAGATTACGGAAACGCATACTGTGAGGAATGCCGATCTGGCGAGGCGGCCGATGAGCTTCTCCTCTGCGACAAATGCGACCGGGGGTTTCATCTTTTCTGCCTCAGACCAATCCTCGTTTCGGTGCCACAAGGCTCATGGTTCTGTCCTTCTTGCTCCAACTACAAGAAGCTCAAAAGATTTCCTCTAATTCAAACCAAAATTGTTGATTTCTTTCGGATTCAAAGGTCTTTTGGGTCGACACAGAAGTCGTATCAAGATAACAGGAAGAGGCGAAAGAGCTTGGTGGTGTCAAAGAAGAAGAGGAAGCTGTTGCCGTTCAATCCAATTGAAAATCCTGCGAGGAGATTGGAGCAGATGGCATCTTTGGCTACAGCATTGACGGCAACAGGGACGGAGTTCAATAACGAGCTTACTTACATGCCCAGCATGGCTCCCAGGTCAGCGAACCGTGCAGTTCTCGAGCAGGGAGGAATGCAGGTGTTACCTAGAGAAGACATTGCAACCTTAAATCTGTGCAAGAACATGATGGAGAGAGGAGAATGGCCTCCCCTAATGGTTGTATTTGATTCTCAAGAAGGGTTCACTGTAGAGGCAGATAGATTCATAAAGGATTTAACAATAATCACAGAGTATACTGGTGATGTTGATTACTTGAAGAATCGTGAGCATGACGATGGCGATAGCATGATGACTCTGATATCTGCCGCTGATGCTTCACAAAGGCTTGTTATCTGTCCCGATAAACGTGGGAACATCGCCCGATTCATTAGTGGCATCAACAATCATACGCCGGATGGGAAGAAGAAACAGAACCTGAAATGTGTTAGATTTGATGTCGATGGTGAGTGCCGGACTTTGCTGATCGCAAACAGGGATATACCAAAGGGGGAGAGGTTGTATTACGATTACAACGGACACGAGCACGAATACCCGACTCGGCACTTTGTCTAG 1041 0.4736 MAAARTLKRRRTQAPMRLSLPLNDTCEGQEDYGNAYCEECRSGEAADELLLCDKCDRGFHLFCLRPILVSVPQGSWFCPSCSNYKKLKRFPLIQTKIVDFFRIQRSFGSTQKSYQDNRKRRKSLVVSKKKRKLLPFNPIENPARRLEQMASLATALTATGTEFNNELTYMPSMAPRSANRAVLEQGGMQVLPREDIATLNLCKNMMERGEWPPLMVVFDSQEGFTVEADRFIKDLTIITEYTGDVDYLKNREHDDGDSMMTLISAADASQRLVICPDKRGNIARFISGINNHTPDGKKKQNLKCVRFDVDGECRTLLIANRDIPKGERLYYDYNGHEHEYPTRHFV* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00116 346 Gene3D SET domain 118 346 IPR046341 -
Eupl14g00116 346 Pfam PHD-finger 36 83 IPR019787 -
Eupl14g00116 346 SMART PHD_3 36 82 IPR001965 -
Eupl14g00116 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 84 IPR013083 -
Eupl14g00116 346 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 112 344 - -
Eupl14g00116 346 SUPERFAMILY SET domain 203 336 IPR046341 -
Eupl14g00116 346 CDD SET_ATXR5_6-like 209 346 - -
Eupl14g00116 346 FunFam Histone-lysine N-methyltransferase ATXR5 118 346 - -
Eupl14g00116 346 CDD PHD_BAZ2A_like 36 81 - -
Eupl14g00116 346 SUPERFAMILY FYVE/PHD zinc finger 22 89 IPR011011 -
Eupl14g00116 346 ProSiteProfiles SET domain profile. 212 334 IPR001214 GO:0005515
Eupl14g00116 346 ProSiteProfiles Zinc finger PHD-type profile. 34 84 IPR019787 -
Eupl14g00116 346 ProSitePatterns Zinc finger PHD-type signature. 37 81 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00116 Eupl-Chr14 1552783 1559609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00116 32 98 C2H2 Transcription Factor Family AT3G01460 37.313 1.20e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl14g00116 PHD 1.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00116 K24406 - nnu:104594264 565.844