Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00103 ATGATAAAAGACATGATTATTAATGCCTCACTCGTTCCTGCTTCAGAAGTCCTTTCTCAGCTTGTGGAGGTCATAGTTGAGACTGTACATGCCGCCAAAGACGTCCTCATCGAGAAGGAGAGCTTTGCGGAACTCTCGACTTACTTGGAAAGGATCATTCCTGTTCTTAAAGAGTTGATTAAGAAAAACATCCATAACTCCGAGAGCTTAAACAATGCTACTGAGATTCTTGGCAGGGAGATTAAAATTGCGAAGCAGCTAGCTCTAGAGTGCAGCAAGAGAAACAAAGTCTATCTCTTAGTCAGTTGCCGGAGGATTGTTAAGTGCTTAGAGGCCACGACACGAGAGATTAGCCGTGCTCTGAGCCTCATCCCTTTGGCCTCACTGGATCTCTCATTGGGTATAAATGAAGAGATCAACAAGCTATGTGATAATATGCTGAAAGCAGAGTTTAGCACAGCTGTAGCAAAGGAAGAGATCTTGGAGAAAATCGAATTGGGAATACAGGAGAGGAATGTTGATCGTTCTTATGCAAATAAATTGCTGGTTCTCATCGCAGAGGCTGTTGGGATCTCAGCTGAACAGTCATCATTGAAGAAGGAATTTGAAGAATTCAAGAGAGAAATAGAGGATGCGCGGCTGAGGAAGGACCAGGCTGAGGCTATACAAATGGATCAGATCATTGCATTGCTTGGAAGGGCAGATGCCACTTCTTCGATTAAGGAGAAAGAGATGAAGTATTTCAACAAGAGGAAGTCTCTAGGTAATCAACTGTTGGAGCCTCTCCAGTCATTTTATTGCCCGATCACACGGGATGTTATGGTGGACCCTGTGGAGACCTCCTCTGGGCAGACATTTGAGAGAAGTGCCATAGAGAAGTGGTTTTCAGATGGGAACAACCTTTGTCCCTTGACCATGACGTCCTTAAACACGACAATACTACGGCCTAACAAAACTCTGCGACAATCAATCGAAGAATGGAATGATAGGAACACCATGATCACTATTGCTTCCATGAAACCCAAACTTCTGTCAGTTGAGGAGCAAGAAGTGCTTCATTCCCTAGGCCAGCTGCAGGATCTTTGTGAAGAAAGAGATTTGCACCGAGAATGGGTAACACTGGAGAACTACATACCGATTCTTATTGGACTTCTTGGTGCAAAAAATCGTGAGATAAGGAATCTTTCTTTGGTTATCCTTTGCATTCTGGCGAAGGATAGCAATGAGACCAAGGAAAGAATTGCAGATGTGGATAATGCCATTGAATCAATTGTTCGCTCCCTTGCACGTCGTATTGGGGAAAGTAAGTTAGCAGTGGCATTGCTATTGGAACTATCAAAAAGTAATATGGTACGTGATCGCATTGGGAGGGCCCAGGGCTGCATACTCCTCCTTGTGACCATGTCAAGCAGTGATGACACTCAAACTGCCAGAGATGCAAAGGAGATTTTGGAAAATCTCTCATTCCATGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTTAAACCTTTGTTGCAGCGTCTTTCTTCAGGACCAGAAAATGTCAAGATGATCATGGTGACAACTTTGGCTGAAATGGAGTTGAGTGATCACAACAAATCTGCTTTGTTTGAAGATGGGGTACTGGGACCGCTTCTTCACTTGGTCTCACTTGGTGATGCAGAGATGAAGAAAATGGCTGCCAAAGCTCTTCAGAACCTCTCAAGCCTACCTCAGAATGGCTTGCAGATGATTAAAGAAGGGGCAGCGGGCCCACTACTTGACCTCCTCTACCGTCACAGATCACCATCCAATAGATTGCGGGAACAGGTGGCAGCCATAATTACGAACCTTGCCATATCAACTGCAGCACATGAAACCAGTCAGGCGCAGGTGTCACTGCTGGAATCTGATGATGACATTTTCAGGCTCTTCTCTTTAATTAACTTGACAGGACCTGATATACAACAAAACATTCTTCGGACCTTTCATGCCATGTGCCAATCCCCCTTTGCAACAGACATCAAGTCTAAGCTAAGACAGTGCTCAGCTGTTCAAGTATTGGTTCAATTGTGCGAGCTTGATAATGTTACAGTACGGGCAAACGCTGTGAAGCTGTTCTGTTGTTTGACCGAAGATGGCGATGACGACATGTTATCGGAGCACGTGAATCTGGGGTGCATTGAAATTTTACTCAAGATTATCAAAACTTCCAATGATGAGGAAGAGATGGCTGCTGCAATGGGTATCATCTCTAACCTCCCCACAGACCACACCCAGATCACTCAGTGGCTTCTAGATGCTGGGGCGCTTCCAATCATTTTCAGATTTCTCACAGATGGAAATCGTAATGGTTCCTATAATAATCAGCTAATAGAAAATGCTGTTGGAGCTATATGCCGTTTCACTGTTTCAAGGAACCAGGAATGGCAAAAGAGAGCAGCAGAAGCTGGCATTATCCCGGTGCTGGTCAAGTTGCTAGGATCTGGAACCACTTGGACAAAACGGCATGCAGCCATTTCACTTGCACAGTTTTCAGAGAATTCGATTGGGCTGAGCAGACCAATAGAGAAACGTGTGGGATTCTGGTGCTGCTCGTCGCCATCTGAAACTGGCTGCCCAGTGCACATGGGCATCTGTACGGTGGAGTCATCATTTTGCCTGGTGGAGGGTGATGCAGTGGAACCCCTGGTGAGGGTGCTCGGGGAGCCAGATGTTGGGGCCTGCGAGGCCGCTTTACAGGCGCTGTTGACACTTATTGATGGTGAAAGACTGCAGAGTGGTAGTAAGGTGCTTAGTGAGGCAAATGCCATTGTGCCAATCATAAGGTTACTAGGCTCCCCTTCTACTGAATTGCAGGAGAAGGCTCTGCATGCTTTAGAAAGAATTTTCCGGCTGGTGGAGTTCAAGCAAAAGTATGGAGCTTCTGCTCAGATGCCTTTGGTTGACATAACTCAGAGGGGAAATAGTACTATGAGACCTTTGGCAGCCCGAATACTTGCTCACTTGAATGTGCTTCATGAGCAATCTTCTTATTTCTGA 3027 0.4533 MIKDMIINASLVPASEVLSQLVEVIVETVHAAKDVLIEKESFAELSTYLERIIPVLKELIKKNIHNSESLNNATEILGREIKIAKQLALECSKRNKVYLLVSCRRIVKCLEATTREISRALSLIPLASLDLSLGINEEINKLCDNMLKAEFSTAVAKEEILEKIELGIQERNVDRSYANKLLVLIAEAVGISAEQSSLKKEFEEFKREIEDARLRKDQAEAIQMDQIIALLGRADATSSIKEKEMKYFNKRKSLGNQLLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTSLNTTILRPNKTLRQSIEEWNDRNTMITIASMKPKLLSVEEQEVLHSLGQLQDLCEERDLHREWVTLENYIPILIGLLGAKNREIRNLSLVILCILAKDSNETKERIADVDNAIESIVRSLARRIGESKLAVALLLELSKSNMVRDRIGRAQGCILLLVTMSSSDDTQTARDAKEILENLSFHDQNVIQMAKANYFKPLLQRLSSGPENVKMIMVTTLAEMELSDHNKSALFEDGVLGPLLHLVSLGDAEMKKMAAKALQNLSSLPQNGLQMIKEGAAGPLLDLLYRHRSPSNRLREQVAAIITNLAISTAAHETSQAQVSLLESDDDIFRLFSLINLTGPDIQQNILRTFHAMCQSPFATDIKSKLRQCSAVQVLVQLCELDNVTVRANAVKLFCCLTEDGDDDMLSEHVNLGCIEILLKIIKTSNDEEEMAAAMGIISNLPTDHTQITQWLLDAGALPIIFRFLTDGNRNGSYNNQLIENAVGAICRFTVSRNQEWQKRAAEAGIIPVLVKLLGSGTTWTKRHAAISLAQFSENSIGLSRPIEKRVGFWCCSSPSETGCPVHMGICTVESSFCLVEGDAVEPLVRVLGEPDVGACEAALQALLTLIDGERLQSGSKVLSEANAIVPIIRLLGSPSTELQEKALHALERIFRLVEFKQKYGASAQMPLVDITQRGNSTMRPLAARILAHLNVLHEQSSYF* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00103 1008 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Eupl14g00103 1008 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Eupl14g00103 1008 SUPERFAMILY ARM repeat 504 960 IPR016024 -
Eupl14g00103 1008 Gene3D - 636 853 IPR011989 -
Eupl14g00103 1008 Gene3D - 342 635 IPR011989 -
Eupl14g00103 1008 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Eupl14g00103 1008 SUPERFAMILY RING/U-box 254 332 - -
Eupl14g00103 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 339 IPR013083 -
Eupl14g00103 1008 SUPERFAMILY ARM repeat 346 528 IPR016024 -
Eupl14g00103 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Eupl14g00103 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1008 - -
Eupl14g00103 1008 Coils Coil 195 222 - -
Eupl14g00103 1008 SMART arm_5 710 751 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 667 707 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 876 916 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 572 615 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 365 405 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 531 571 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 802 842 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 920 960 IPR000225 GO:0005515
Eupl14g00103 1008 SMART arm_5 753 799 IPR000225 GO:0005515
Eupl14g00103 1008 CDD RING-Ubox_PUB 265 314 IPR045210 -
Eupl14g00103 1008 Pfam Armadillo/beta-catenin-like repeat 531 571 IPR000225 GO:0005515
Eupl14g00103 1008 Gene3D - 873 1006 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00103 Eupl-Chr14 1401377 1413438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00103 263 1008 U-box Gene Family AT1G76390 30.330 1.11e-70 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00103 - - nnu:104594089 1491.09