Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00067 ATGGCGGAGGAATCTCCTGTGGTGGAGACAGAGGAGCATGTGGACCTTGATGAGGACAACTACATCGAAGAGATAGATGATGAAGTTGAGGAAGCAACAGATAGAGTGGACGCAATTGAAGATGAACCTGTGGAAGAAGAACAAGAGCCCTTGAAAATTGAGGAGCATGAGAAGGATCCGTCGTCAGAAGCTGATAGAGCTCACAATCGTGTTGAGTCTGTGGAGAGTGAGGAGAAGCATACTGCTTCCATTGATGAAGATGACAAAGAGAAGCGTACAGAGCTTCTTGCTCTTCCTCCTCATGGGTCTCAGATTTTCATTGGTGGGATTCCTCGAGATGTCACGGAAGAAGATTTGAAGGGTCTCTGTGAACCAATTGGTGAAGTTGCTGAGGTAAGACTAATGAAGGATAAGGATACGGGAGAAAGTAAGGGCTATGCTTTTATAACATTCAGAACAAAGGAGTTGGCACAACAGGCCATTGAAGAGTTTCATAATAAAGAATTCAAGGGGAGAACGTTAAGGTGTTCACTCTCTCAAGCTAAACACAGGTTGTTTATAGGCAACATTCCAAAGAGCTGGATGGAAGAGGAGCTGCGAAGAGTCATTGAAGAGAATGGTCCTGGAGTTGAAAATATTGAGCTCGTAAAGGATCCCCAAAATCCAAGCCGCAACCGTGGATTTGCTTTCGTTGAGTTTTACAATAGTGCCTGTGCCGATTATGCAAGACAGAAATTGTCGAGTCCGAAAATTAAGCTAGATGGCAACACCCCAACTGTTAGCTGGGCTGATCCTAAGAGTGCACCTGATCCTTCTGCTGCTGCTCAGGTAAAGGCTCTATATGTGAAAAACTTGCCCGACAACACTACATCTGAACAATTGAAAGAACTATTCCAACGCCATGGAGAGGTTACAAAAGTCATTCTGCCACCTGCTAAAGCTGGGCAGAGCAAGCGGGATTTTGGATTCATCCATTTTGCAGAGAGATCGAGTGCATTGAAGGCTGTAAAAGAAACAGAAAAATATGAAATTGACGGTCATGTCTTGGACGTCTCCCTTGCTAAGCCTCAGAATGACAAGAAATATGATTCAACTTATCCTTACAAACCAGGGATTCTTCCAGGTTACCATTCATATCCAGGTTATGGTTTTGTTGGAGATCCATATGGAGCACTAGGTGGTCGATATGGTGCTGCTGCTCGATTTCAGCAGCCAATGATATACGGTAGGGGACCAATGCCAGCAGGGATGCAAATGGTGCCAATGGTTCTACCAGATGGTCAACTTGGCTATGTTCTTCAGCAACCAGGTGCACAGGCTCCATCCCCGCCTACTCGTAGGAATGATCGAAGTGGCGGCTCAGGTGGAGCACAAAGACGAGGCGGAAGTAGTGGCAGCGGTGGTGGTGATGACATTCGTGGCCGAAGGAGGACGTCCTCCCTAGGTCCAGATCCTTGGATGGTCCTCAGGATTGACATCACACAAGCTTGA 1491 0.4634 MAEESPVVETEEHVDLDEDNYIEEIDDEVEEATDRVDAIEDEPVEEEQEPLKIEEHEKDPSSEADRAHNRVESVESEEKHTASIDEDDKEKRTELLALPPHGSQIFIGGIPRDVTEEDLKGLCEPIGEVAEVRLMKDKDTGESKGYAFITFRTKELAQQAIEEFHNKEFKGRTLRCSLSQAKHRLFIGNIPKSWMEEELRRVIEENGPGVENIELVKDPQNPSRNRGFAFVEFYNSACADYARQKLSSPKIKLDGNTPTVSWADPKSAPDPSAAAQVKALYVKNLPDNTTSEQLKELFQRHGEVTKVILPPAKAGQSKRDFGFIHFAERSSALKAVKETEKYEIDGHVLDVSLAKPQNDKKYDSTYPYKPGILPGYHSYPGYGFVGDPYGALGGRYGAAARFQQPMIYGRGPMPAGMQMVPMVLPDGQLGYVLQQPGAQAPSPPTRRNDRSGGSGGAQRRGGSSGSGGGDDIRGRRRTSSLGPDPWMVLRIDITQA* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00067 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 265 IPR000504 GO:0003723
Eupl14g00067 496 SUPERFAMILY RNA-binding domain, RBD 271 378 IPR035979 GO:0003676
Eupl14g00067 496 SMART rrm1_1 279 352 IPR000504 GO:0003723
Eupl14g00067 496 SMART rrm1_1 184 261 IPR000504 GO:0003723
Eupl14g00067 496 SMART rrm1_1 104 177 IPR000504 GO:0003723
Eupl14g00067 496 MobiDBLite consensus disorder prediction 438 461 - -
Eupl14g00067 496 MobiDBLite consensus disorder prediction 433 485 - -
Eupl14g00067 496 MobiDBLite consensus disorder prediction 49 90 - -
Eupl14g00067 496 SUPERFAMILY RNA-binding domain, RBD 182 268 IPR035979 GO:0003676
Eupl14g00067 496 SMART rrm2_1 104 177 IPR003954 GO:0003676
Eupl14g00067 496 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 184 264 - -
Eupl14g00067 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 356 IPR000504 GO:0003723
Eupl14g00067 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Eupl14g00067 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 250 IPR000504 GO:0003723
Eupl14g00067 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Eupl14g00067 496 MobiDBLite consensus disorder prediction 1 90 - -
Eupl14g00067 496 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 11 183 - -
Eupl14g00067 496 MobiDBLite consensus disorder prediction 10 48 - -
Eupl14g00067 496 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 17 490 - -
Eupl14g00067 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Eupl14g00067 496 SUPERFAMILY RNA-binding domain, RBD 99 182 IPR035979 GO:0003676
Eupl14g00067 496 Gene3D - 184 264 IPR012677 -
Eupl14g00067 496 Gene3D - 22 183 IPR012677 -
Eupl14g00067 496 Gene3D - 265 365 IPR012677 -
Eupl14g00067 496 Coils Coil 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00067 Eupl-Chr14 976461 982989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00067 104 454 Eukaryotic Initiation Factors Gene Family AT1G22760 27.577 1.17e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00067 K13161 - nnu:104604668 687.952