LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl14g00058	ATGGCGGTTGTTGAGAATGCTGGTGTCGATTTGGGGATTAATGTTGGTTCTTCGACTCGGAATTTTGAGGCGGCGGCGGCGGATTCGCATCTCCCCAACGATTTCGATCAAACGAAGCAGAATCACTTAGGGGTTCGTATGATCGATTCTAATTCACAGCAGAGCAACAACCCACTTTTACTGCCGCACGATCAAGCCTTCCACATGAAGGTCCAGCAATTTCAGCAACATCAGCAGAGGGGGACTGCCACTGTGCACGTTAGCAACCACAAGACTCAGATTCAGCAGGTTCAGCACATCCTTGACCAGGGACAGAAGAACAGCGGGGTGCAGAATCTGCAGGTGGGAGGAGGGATGACCACGACCACGACTGGGAAGTCTGGGTTTGGGCATGCCCATCAGCGATCGAACGGTGTCGATTTGCAGAGGAACGGAGACGTCGGTGAGGGTTTCAAGCGGGATATGAGGGAATTGGAGGAACTCCTCTCGAAGTTGAATCCTATGGCTGAAGAATTCGTTCCACCCTCGCTCGCTAACCATGGATTGAGTGGCAGCCTTTATACTAACAACTTTGTGATGCACAATAACACTGGCAACGGCAATGTCGTTGGAAGACGGAAGAAGAATAACTATAGCCAAGGAAAGCGGAGAATGAACAGTCGAACAAGTATGGCACAGCGAGAAGAGGTAATTAGGAGGACCGTGTATGTCTCTGACATTGATCACCAGGTTACTGAAGAACAGCTTGCAGCCCTCTTCATCAATTGTGGACATGTTGTTGACTGCCGCATATGCGGTGATCCTAATTCCGTTCTTCGTTTTGCTTTTATTGAGTTTACTGACGAGGAAGGTGCAAGGGCTGCCTTAAGTCTAGCTGGTACAATGCTCGGATACTACCCAGTAAGGGTGCTTCCCTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCGAGGTCTGAAGATGAACGCGAAATGTGCGCAAGAACCATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCAGATGTCAAACTCTTCTTTGAATCAATCTGTGGAGAGGTTTATCGCTTGAGACTGCTTGGAGACTATCATCATTCTACACGCATTGCTTTTGTTGAGTTCGTAATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGCGTGGTGCTGGGATCCTTGCCGATAAGGGTAAGCCCATCAAAGACGCCAGTTCGACCACGTGCTCCTCGCCCACCCATGCATTGA	1257	0.4853	MAVVENAGVDLGINVGSSTRNFEAAAADSHLPNDFDQTKQNHLGVRMIDSNSQQSNNPLLLPHDQAFHMKVQQFQQHQQRGTATVHVSNHKTQIQQVQHILDQGQKNSGVQNLQVGGGMTTTTTGKSGFGHAHQRSNGVDLQRNGDVGEGFKRDMRELEELLSKLNPMAEEFVPPSLANHGLSGSLYTNNFVMHNNTGNGNVVGRRKKNNYSQGKRRMNSRTSMAQREEVIRRTVYVSDIDHQVTEEQLAALFINCGHVVDCRICGDPNSVLRFAFIEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRPPMH*	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl14g00058	418	SUPERFAMILY	RNA-binding domain, RBD	203	309	IPR035979	GO:0003676
	Eupl14g00058	418	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	160	411	-	-
	Eupl14g00058	418	CDD	RRM1_CID8_like	231	310	IPR034823	-
	Eupl14g00058	418	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	233	308	IPR000504	GO:0003723
	Eupl14g00058	418	Pfam	Ataxin-2 C-terminal region	162	176	IPR009818	-
	Eupl14g00058	418	CDD	RRM2_CID8_like	326	406	IPR034825	-
	Eupl14g00058	418	MobiDBLite	consensus disorder prediction	197	223	-	-
	Eupl14g00058	418	MobiDBLite	consensus disorder prediction	125	146	-	-
	Eupl14g00058	418	MobiDBLite	consensus disorder prediction	125	141	-	-
	Eupl14g00058	418	FunFam	Polyadenylate-binding protein-interacting protein 10	324	402	-	-
	Eupl14g00058	418	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	332	399	IPR000504	GO:0003723
	Eupl14g00058	418	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	235	297	IPR000504	GO:0003723
	Eupl14g00058	418	SUPERFAMILY	RNA-binding domain, RBD	321	412	IPR035979	GO:0003676
	Eupl14g00058	418	Gene3D	-	317	412	IPR012677	-
	Eupl14g00058	418	Gene3D	-	195	310	IPR012677	-
	Eupl14g00058	418	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	330	406	IPR000504	GO:0003723
	Eupl14g00058	418	FunFam	Polyadenylate-binding protein-interacting protein 11	197	310	-	-
	Eupl14g00058	418	SMART	rrm1_1	331	402	IPR000504	GO:0003723
	Eupl14g00058	418	SMART	rrm1_1	234	304	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl14g00058	Eupl-Chr14	882922	894640	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl14g00058	232	394	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.150	3.81e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl14g00058	-		-	nnu:104593733	677.937