Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00052 ATGAGTGGTCGTTCTGCTCGCACAATCTATGTTGGCAACCTTCCCTCAGATATACGAGAATGGGAAATTGAAGATCTATTTTACAAGTATGGTCGTATTGTGGATGTTGAACTGAAGATCCCACCTCGCCCTCCTGTTTATTGTTTTGTAGAGTTTGAGGATGCTCGGGATGCTGAAGATGCAATCAGGGGTCGGGATGGCTATAACTTTGATGGGTGTCGTTTAAGGGTTGAACTTGCCCACGGTGGTAGAGGGCAATCATCATCAATTGATCGTCGAGGTGGTGGAGGTGGAGGTGGAGGGGGAGGTGGAGGTGGAGGTGGCAGACAAGTTGGTGGGGTGTCACGCCATTCTGAATATCGAGTTGTTGTTCGTGGACTTCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCACATGCGGAAGGCTGGTGATGTCTGTTTTGCCCAAGTTTTCCGTGATGGCGATGGAACCATGGGTATGGTAGACTATACTAATTATGAGGACATGAAATATGCTATTCGGAAACTCGATGACACTGAGTTTAGAAATCCTTTTTCAAGGGCCTATATTCGAGTGAAGGCCTATGAGAGCAGTGTGTCAGGAAGCCGTAGCCGAAGTAGGAGCCGCAGTAGAAGCAGAAGTGTAGGAAGGAAGCGGAGCAAGTCATTGGAACGATCTGTGTCTAGATCAGCATCAAAATCTAGATCTGCGTCAAGATCTAGATCTGCATCTCCTGCTAGATTGTCCAGATCGAGGTCAAGGTCGAGATCGAGGTCTGTCTCACCCCACCAGGTGATACCTCGGTCTTTTTTCCTTTGTTTTCAGAATCTCGGATATATATCCTTTTTTATGACCAGGTCGTGGAAGATTATTCCATGGTTCAAAGTACATGGTATCGTTCATGGGCAATACTGA 918 0.4662 MSGRSARTIYVGNLPSDIREWEIEDLFYKYGRIVDVELKIPPRPPVYCFVEFEDARDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSSIDRRGGGGGGGGGGGGGGGRQVGGVSRHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAQVFRDGDGTMGMVDYTNYEDMKYAIRKLDDTEFRNPFSRAYIRVKAYESSVSGSRSRSRSRSRSRSVGRKRSKSLERSVSRSASKSRSASRSRSASPARLSRSRSRSRSRSVSPHQVIPRSFFLCFQNLGYISFFMTRSWKIIPWFKVHGIVHGQY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00052 305 MobiDBLite consensus disorder prediction 201 261 - -
Eupl14g00052 305 Gene3D - 120 197 IPR012677 -
Eupl14g00052 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Eupl14g00052 305 MobiDBLite consensus disorder prediction 230 251 - -
Eupl14g00052 305 SMART rrm1_1 8 78 IPR000504 GO:0003723
Eupl14g00052 305 SMART rrm1_1 121 190 IPR000504 GO:0003723
Eupl14g00052 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Eupl14g00052 305 SUPERFAMILY RNA-binding domain, RBD 6 185 IPR035979 GO:0003676
Eupl14g00052 305 FunFam serine/arginine-rich splicing factor SR34A-like 2 119 - -
Eupl14g00052 305 CDD RRM1_SF2_plant_like 8 79 - -
Eupl14g00052 305 FunFam serine/arginine-rich splicing factor SR34A-like 120 197 - -
Eupl14g00052 305 Gene3D - 2 119 IPR012677 -
Eupl14g00052 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 184 IPR000504 GO:0003723
Eupl14g00052 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Eupl14g00052 305 MobiDBLite consensus disorder prediction 84 115 - -
Eupl14g00052 305 CDD RRM2_SF2_plant_like 120 194 - -
Eupl14g00052 305 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00052 Eupl-Chr14 800921 810383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00052 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 35.526 5.59e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00052 K12890 - nnu:104593794 321.627